miRNA display CGI


Results 1 - 20 of 76 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17082 5' -57 NC_004333.2 + 1121 0.7 0.372446
Target:  5'- -cGCGCGaagUCGGUGccguGCUG-CGCGCGAc -3'
miRNA:   3'- guUGCGC---AGCCGCu---CGACuGCGUGCU- -5'
17082 5' -57 NC_004333.2 + 1302 0.67 0.548671
Target:  5'- -uACGCGaUCGGCGugaauugcAGCUGAUugaaCACGAa -3'
miRNA:   3'- guUGCGC-AGCCGC--------UCGACUGc---GUGCU- -5'
17082 5' -57 NC_004333.2 + 2877 0.71 0.338798
Target:  5'- aCGACGuCGcagCGGCGAgGCUGAUGUugGc -3'
miRNA:   3'- -GUUGC-GCa--GCCGCU-CGACUGCGugCu -5'
17082 5' -57 NC_004333.2 + 3005 0.66 0.591799
Target:  5'- cCGGCGCGUCcgccGCGAcGUa-GCGCGCGAa -3'
miRNA:   3'- -GUUGCGCAGc---CGCU-CGacUGCGUGCU- -5'
17082 5' -57 NC_004333.2 + 3063 0.68 0.459958
Target:  5'- gGACGCGcCGGCGAGCgUcuacggcauuccguuGACGgGCGu -3'
miRNA:   3'- gUUGCGCaGCCGCUCG-A---------------CUGCgUGCu -5'
17082 5' -57 NC_004333.2 + 3115 0.66 0.580946
Target:  5'- uCAACG-G-CGGCcAGCUGcCGUACGAu -3'
miRNA:   3'- -GUUGCgCaGCCGcUCGACuGCGUGCU- -5'
17082 5' -57 NC_004333.2 + 3309 0.67 0.531683
Target:  5'- -cGCGCGgCGGCGcgcGGUUGAauuaaacuaucgcuuCGCGCGAu -3'
miRNA:   3'- guUGCGCaGCCGC---UCGACU---------------GCGUGCU- -5'
17082 5' -57 NC_004333.2 + 4652 0.68 0.48604
Target:  5'- uCAugGCGaCgGGCaGGCcGGCGCGCGGg -3'
miRNA:   3'- -GUugCGCaG-CCGcUCGaCUGCGUGCU- -5'
17082 5' -57 NC_004333.2 + 5692 0.68 0.456011
Target:  5'- -uGCGCGUUGccuGCaAGCUGcCGCACGGc -3'
miRNA:   3'- guUGCGCAGC---CGcUCGACuGCGUGCU- -5'
17082 5' -57 NC_004333.2 + 6654 0.74 0.215167
Target:  5'- gCAGCGCGcUCGGCGcGCUcgagcaGGCGCGCa- -3'
miRNA:   3'- -GUUGCGC-AGCCGCuCGA------CUGCGUGcu -5'
17082 5' -57 NC_004333.2 + 6720 0.68 0.48604
Target:  5'- gAGCGCGcCGaGCGcGCUGccgaGCGCGAu -3'
miRNA:   3'- gUUGCGCaGC-CGCuCGACug--CGUGCU- -5'
17082 5' -57 NC_004333.2 + 7423 0.67 0.559374
Target:  5'- uCGACGCG-CGGCgcccaGAGCUGcACGagACGGc -3'
miRNA:   3'- -GUUGCGCaGCCG-----CUCGAC-UGCg-UGCU- -5'
17082 5' -57 NC_004333.2 + 7941 0.66 0.570135
Target:  5'- gGACGCGauggGGCGAGCgcgaGCugGAa -3'
miRNA:   3'- gUUGCGCag--CCGCUCGacugCGugCU- -5'
17082 5' -57 NC_004333.2 + 9229 0.67 0.548671
Target:  5'- aAGCGCGcagcugCGGuCGAGCaGGCaaaGCGCGAc -3'
miRNA:   3'- gUUGCGCa-----GCC-GCUCGaCUG---CGUGCU- -5'
17082 5' -57 NC_004333.2 + 9604 0.67 0.559374
Target:  5'- cCGGCGCGgcaUCGGCcGGUUG-CGCACc- -3'
miRNA:   3'- -GUUGCGC---AGCCGcUCGACuGCGUGcu -5'
17082 5' -57 NC_004333.2 + 9733 0.73 0.238811
Target:  5'- --cCGCGUCGGCGAcaugaGCgccgGAUGCGCGc -3'
miRNA:   3'- guuGCGCAGCCGCU-----CGa---CUGCGUGCu -5'
17082 5' -57 NC_004333.2 + 10213 0.69 0.399132
Target:  5'- gCGGC-CGUCGGCaucaaAGCUG-CGCGCGGu -3'
miRNA:   3'- -GUUGcGCAGCCGc----UCGACuGCGUGCU- -5'
17082 5' -57 NC_004333.2 + 11706 0.74 0.215167
Target:  5'- gCAGCGCcgggCGGCGuGCUGGCGUccugcGCGAu -3'
miRNA:   3'- -GUUGCGca--GCCGCuCGACUGCG-----UGCU- -5'
17082 5' -57 NC_004333.2 + 11824 0.67 0.538032
Target:  5'- uCAGCGCGaCGGCGcgcuccAGCUuGCGC-CGGu -3'
miRNA:   3'- -GUUGCGCaGCCGC------UCGAcUGCGuGCU- -5'
17082 5' -57 NC_004333.2 + 12455 0.66 0.602686
Target:  5'- uGGCGCGcCGggcggggcGCGGGCgGGCGCuACGGc -3'
miRNA:   3'- gUUGCGCaGC--------CGCUCGaCUGCG-UGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.