miRNA display CGI


Results 21 - 40 of 304 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17084 5' -60.3 NC_004333.2 + 15461 0.66 0.449757
Target:  5'- gGgGUCGa-UCGGCGCGCuuGGCGUGCc -3'
miRNA:   3'- -CgCAGUgcGGCCGCGUGggCUGUGCG- -5'
17084 5' -60.3 NC_004333.2 + 12294 0.66 0.449757
Target:  5'- gGCGgCGCGCauugCGGCGU-CCUG-CGCGCc -3'
miRNA:   3'- -CGCaGUGCG----GCCGCGuGGGCuGUGCG- -5'
17084 5' -60.3 NC_004333.2 + 39096 0.66 0.449757
Target:  5'- cGCGUUuuUGCCucGGCgaacagcugcaGCGCCuCGACAUGCc -3'
miRNA:   3'- -CGCAGu-GCGG--CCG-----------CGUGG-GCUGUGCG- -5'
17084 5' -60.3 NC_004333.2 + 25499 0.66 0.449757
Target:  5'- cGUGUCAUgaaguagaugcgGCCGaGCGCGuCuuGGUACGCg -3'
miRNA:   3'- -CGCAGUG------------CGGC-CGCGU-GggCUGUGCG- -5'
17084 5' -60.3 NC_004333.2 + 41719 0.66 0.449757
Target:  5'- gGCGUacgGCCGcagccCGCGCCCGACAaucUGCc -3'
miRNA:   3'- -CGCAgugCGGCc----GCGUGGGCUGU---GCG- -5'
17084 5' -60.3 NC_004333.2 + 46875 0.66 0.449757
Target:  5'- cGUGUUGCGCaCGGUaUAgaCGGCACGCu -3'
miRNA:   3'- -CGCAGUGCG-GCCGcGUggGCUGUGCG- -5'
17084 5' -60.3 NC_004333.2 + 18447 0.66 0.449757
Target:  5'- aGCaUgAUGCCGGCGagguuaaaCGACACGCc -3'
miRNA:   3'- -CGcAgUGCGGCCGCgugg----GCUGUGCG- -5'
17084 5' -60.3 NC_004333.2 + 22044 0.66 0.449757
Target:  5'- --aUCACGCgGGCGgACagaucgugcaCGGCGCGUa -3'
miRNA:   3'- cgcAGUGCGgCCGCgUGg---------GCUGUGCG- -5'
17084 5' -60.3 NC_004333.2 + 18169 0.66 0.449757
Target:  5'- aGCcgauUGCCGGCGUGCCgggUGAUGCGCu -3'
miRNA:   3'- -CGcaguGCGGCCGCGUGG---GCUGUGCG- -5'
17084 5' -60.3 NC_004333.2 + 36235 0.66 0.447865
Target:  5'- uGCGUCGCGUCauaguagaccuCGCcgaGCCaCGACAUGCa -3'
miRNA:   3'- -CGCAGUGCGGcc---------GCG---UGG-GCUGUGCG- -5'
17084 5' -60.3 NC_004333.2 + 15949 0.66 0.44034
Target:  5'- gGCgGUCACGgCGGCuCGCUCG-CGgGCu -3'
miRNA:   3'- -CG-CAGUGCgGCCGcGUGGGCuGUgCG- -5'
17084 5' -60.3 NC_004333.2 + 44426 0.66 0.44034
Target:  5'- uCG-CugGCUGGUGCGUgCGAgGCGCu -3'
miRNA:   3'- cGCaGugCGGCCGCGUGgGCUgUGCG- -5'
17084 5' -60.3 NC_004333.2 + 27315 0.66 0.44034
Target:  5'- aCGagGCGUCGGCGCaggcagacGCUCGAuCACGa -3'
miRNA:   3'- cGCagUGCGGCCGCG--------UGGGCU-GUGCg -5'
17084 5' -60.3 NC_004333.2 + 28608 0.66 0.44034
Target:  5'- uGCG--AUGCCGGgaaUGCACgcgUCGGCGCGCa -3'
miRNA:   3'- -CGCagUGCGGCC---GCGUG---GGCUGUGCG- -5'
17084 5' -60.3 NC_004333.2 + 7621 0.66 0.44034
Target:  5'- uGCGaUUGCGUCuGCaGCACCUGGaacaGCGCg -3'
miRNA:   3'- -CGC-AGUGCGGcCG-CGUGGGCUg---UGCG- -5'
17084 5' -60.3 NC_004333.2 + 38776 0.66 0.44034
Target:  5'- gGCGa-GCGCCGGCgGCugCgGGaauuucaGCGCg -3'
miRNA:   3'- -CGCagUGCGGCCG-CGugGgCUg------UGCG- -5'
17084 5' -60.3 NC_004333.2 + 31857 0.66 0.44034
Target:  5'- --uUCACGauCgGGCGCAUgucgcaCGACACGCg -3'
miRNA:   3'- cgcAGUGC--GgCCGCGUGg-----GCUGUGCG- -5'
17084 5' -60.3 NC_004333.2 + 37608 0.66 0.431037
Target:  5'- --aUCGuCGCCGGUGCugCaUGAuguCACGCg -3'
miRNA:   3'- cgcAGU-GCGGCCGCGugG-GCU---GUGCG- -5'
17084 5' -60.3 NC_004333.2 + 41778 0.66 0.431037
Target:  5'- --aUCGCGCCGuGC-CGCCCGAaguugccgccCGCGUc -3'
miRNA:   3'- cgcAGUGCGGC-CGcGUGGGCU----------GUGCG- -5'
17084 5' -60.3 NC_004333.2 + 18710 0.66 0.431037
Target:  5'- cGCcUCGUGCgGGCGUuucuacACCCGACuAUGCu -3'
miRNA:   3'- -CGcAGUGCGgCCGCG------UGGGCUG-UGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.