miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17085 3' -46.9 NC_004333.2 + 32086 0.66 0.991881
Target:  5'- cGCAUAGAUCGGCGucGGcGCGU-UCa- -3'
miRNA:   3'- -CGUGUCUAGCUGUuuCU-UGCAcAGcu -5'
17085 3' -46.9 NC_004333.2 + 31773 0.66 0.990563
Target:  5'- cCGCAGAUCG-CGucGAGCG--UCGAc -3'
miRNA:   3'- cGUGUCUAGCuGUuuCUUGCacAGCU- -5'
17085 3' -46.9 NC_004333.2 + 42094 0.66 0.990563
Target:  5'- cGUGCuGcgCGACGAG--GCGUGUCGc -3'
miRNA:   3'- -CGUGuCuaGCUGUUUcuUGCACAGCu -5'
17085 3' -46.9 NC_004333.2 + 13360 0.66 0.990563
Target:  5'- uGUACGGGcgCGGCAcGAGcGGCGUGUCc- -3'
miRNA:   3'- -CGUGUCUa-GCUGU-UUC-UUGCACAGcu -5'
17085 3' -46.9 NC_004333.2 + 24760 0.66 0.990563
Target:  5'- cGCGCGGAUCGGCAu---GCa-GUUGAu -3'
miRNA:   3'- -CGUGUCUAGCUGUuucuUGcaCAGCU- -5'
17085 3' -46.9 NC_004333.2 + 9511 0.66 0.989083
Target:  5'- uGCGCAGGaCGGCGAaccGGAcgGCGUG-CGc -3'
miRNA:   3'- -CGUGUCUaGCUGUU---UCU--UGCACaGCu -5'
17085 3' -46.9 NC_004333.2 + 30532 0.66 0.987252
Target:  5'- gGCGCAGccgugacGUCGACGGuGAaacagACGUGgcgCGAg -3'
miRNA:   3'- -CGUGUC-------UAGCUGUUuCU-----UGCACa--GCU- -5'
17085 3' -46.9 NC_004333.2 + 45300 0.66 0.985585
Target:  5'- cGgACAGGUCGGCAccgacAAGcACGUGgcCGGg -3'
miRNA:   3'- -CgUGUCUAGCUGU-----UUCuUGCACa-GCU- -5'
17085 3' -46.9 NC_004333.2 + 17146 0.66 0.985585
Target:  5'- aGCGCAuGcgCGAgGAAGucguGCGcGUCGAc -3'
miRNA:   3'- -CGUGU-CuaGCUgUUUCu---UGCaCAGCU- -5'
17085 3' -46.9 NC_004333.2 + 20679 0.66 0.985585
Target:  5'- cGCACGGGaUGACGccGGAugGCGUGUaCGGa -3'
miRNA:   3'- -CGUGUCUaGCUGUu-UCU--UGCACA-GCU- -5'
17085 3' -46.9 NC_004333.2 + 43958 0.67 0.983543
Target:  5'- cGCGCAGugCGACAAGGAuuuGCaGUGccgCGAg -3'
miRNA:   3'- -CGUGUCuaGCUGUUUCU---UG-CACa--GCU- -5'
17085 3' -46.9 NC_004333.2 + 12088 0.67 0.98129
Target:  5'- uGCGCAacGAacgCGugAAAGAACccGUCGAa -3'
miRNA:   3'- -CGUGU--CUa--GCugUUUCUUGcaCAGCU- -5'
17085 3' -46.9 NC_004333.2 + 38362 0.67 0.98129
Target:  5'- -aACuGAUCGACGcgcuGucGCGUGUCGGg -3'
miRNA:   3'- cgUGuCUAGCUGUuu--Cu-UGCACAGCU- -5'
17085 3' -46.9 NC_004333.2 + 13833 0.67 0.978813
Target:  5'- gGCgACGGuUCGACGAcGGGCGccgcGUCGAg -3'
miRNA:   3'- -CG-UGUCuAGCUGUUuCUUGCa---CAGCU- -5'
17085 3' -46.9 NC_004333.2 + 37083 0.67 0.978025
Target:  5'- uGCGCGGAuucgcgcuaUCGAgGAcgucgggcagcugcGGGGCGUGcUCGAa -3'
miRNA:   3'- -CGUGUCU---------AGCUgUU--------------UCUUGCAC-AGCU- -5'
17085 3' -46.9 NC_004333.2 + 30631 0.68 0.973143
Target:  5'- uGCAgCAGcgCGGCAAGGcgcGGCGUGcgcugcUCGAg -3'
miRNA:   3'- -CGU-GUCuaGCUGUUUC---UUGCAC------AGCU- -5'
17085 3' -46.9 NC_004333.2 + 46863 0.68 0.973143
Target:  5'- gGUAUAGA-CGGCAcgcuuGGACGUGcCGAg -3'
miRNA:   3'- -CGUGUCUaGCUGUuu---CUUGCACaGCU- -5'
17085 3' -46.9 NC_004333.2 + 25971 0.68 0.96993
Target:  5'- aGCGCAGggCGGCGAAGcGCGg--CGc -3'
miRNA:   3'- -CGUGUCuaGCUGUUUCuUGCacaGCu -5'
17085 3' -46.9 NC_004333.2 + 43710 0.68 0.96645
Target:  5'- uGCGCGGGUUGGCAccuGACGcGUCGc -3'
miRNA:   3'- -CGUGUCUAGCUGUuucUUGCaCAGCu -5'
17085 3' -46.9 NC_004333.2 + 283 0.68 0.96645
Target:  5'- aGCACGGucacgGUCGACGucugcGGAAUGaUGUCGu -3'
miRNA:   3'- -CGUGUC-----UAGCUGUu----UCUUGC-ACAGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.