miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17085 5' -56.9 NC_004333.2 + 25171 0.66 0.57286
Target:  5'- cGCCGUgCCCGgagugacggaUUGCuacgucuacaacaacGGCagcgacAGCGCGAUCa -3'
miRNA:   3'- aCGGCA-GGGU----------AACG---------------CCG------UCGCGUUAG- -5'
17085 5' -56.9 NC_004333.2 + 13963 0.66 0.569555
Target:  5'- cGCCGcgcagCCCGUgccggccgacuucgcGCGGCgcGGCGCGcUCa -3'
miRNA:   3'- aCGGCa----GGGUAa--------------CGCCG--UCGCGUuAG- -5'
17085 5' -56.9 NC_004333.2 + 19820 0.66 0.568455
Target:  5'- gGCCGaUCgcgUCGUUGaCGGCAGCgGCGccGUCu -3'
miRNA:   3'- aCGGC-AG---GGUAAC-GCCGUCG-CGU--UAG- -5'
17085 5' -56.9 NC_004333.2 + 32833 0.66 0.568455
Target:  5'- gUGCCGcgCUUAUggccgGCGGCAGCGa---- -3'
miRNA:   3'- -ACGGCa-GGGUAa----CGCCGUCGCguuag -5'
17085 5' -56.9 NC_004333.2 + 47256 0.66 0.568455
Target:  5'- gUGCC-UCUgcugcGCGGCAGCGCGuUCu -3'
miRNA:   3'- -ACGGcAGGguaa-CGCCGUCGCGUuAG- -5'
17085 5' -56.9 NC_004333.2 + 30614 0.66 0.55748
Target:  5'- gGCCGgacgCCAggucgUGCaGCAGCGCGGc- -3'
miRNA:   3'- aCGGCag--GGUa----ACGcCGUCGCGUUag -5'
17085 5' -56.9 NC_004333.2 + 35419 0.66 0.55748
Target:  5'- gUGCCG-CCUGUgaUGuUGGCGuGCGCAGUg -3'
miRNA:   3'- -ACGGCaGGGUA--AC-GCCGU-CGCGUUAg -5'
17085 5' -56.9 NC_004333.2 + 16001 0.66 0.556385
Target:  5'- uUGCC--CCgAUUGUGGCGGCgauggcaccguggGCGGUCg -3'
miRNA:   3'- -ACGGcaGGgUAACGCCGUCG-------------CGUUAG- -5'
17085 5' -56.9 NC_004333.2 + 20477 0.66 0.556385
Target:  5'- aGCCGguuagcgUCCCg--GCGGCugccGCGCAAc- -3'
miRNA:   3'- aCGGC-------AGGGuaaCGCCGu---CGCGUUag -5'
17085 5' -56.9 NC_004333.2 + 38244 0.66 0.546566
Target:  5'- cGgCGg-CCAUUGCGaGCGGCGUgccaaGAUCg -3'
miRNA:   3'- aCgGCagGGUAACGC-CGUCGCG-----UUAG- -5'
17085 5' -56.9 NC_004333.2 + 11905 0.66 0.546566
Target:  5'- cGUCGcggCCCGgcaUGCGcaGCGGCGCGcgCg -3'
miRNA:   3'- aCGGCa--GGGUa--ACGC--CGUCGCGUuaG- -5'
17085 5' -56.9 NC_004333.2 + 672 0.66 0.546566
Target:  5'- gGCaCGguagugCCCGUgcuCGGUgAGCGCGAUCg -3'
miRNA:   3'- aCG-GCa-----GGGUAac-GCCG-UCGCGUUAG- -5'
17085 5' -56.9 NC_004333.2 + 20937 0.66 0.546566
Target:  5'- cGCCG-CCCAUaccuUGUGGCGuucgagcaggauGCGCGGc- -3'
miRNA:   3'- aCGGCaGGGUA----ACGCCGU------------CGCGUUag -5'
17085 5' -56.9 NC_004333.2 + 28478 0.66 0.524953
Target:  5'- cGCCacaGUCgCAacGCGGCAcGCGCAAg- -3'
miRNA:   3'- aCGG---CAGgGUaaCGCCGU-CGCGUUag -5'
17085 5' -56.9 NC_004333.2 + 23893 0.66 0.524953
Target:  5'- cGCCGUUCaucgUGCGGaagccgaaCGGCGCGuacGUCa -3'
miRNA:   3'- aCGGCAGGgua-ACGCC--------GUCGCGU---UAG- -5'
17085 5' -56.9 NC_004333.2 + 26723 0.66 0.510018
Target:  5'- cGCCGgccaggaacuugaCCCAUUGCGuCGGCGCcccguUCa -3'
miRNA:   3'- aCGGCa------------GGGUAACGCcGUCGCGuu---AG- -5'
17085 5' -56.9 NC_004333.2 + 9249 0.67 0.501565
Target:  5'- cUGCCGUCgCGaacgaacgcaaGCGcGCAGCuGCGGUCg -3'
miRNA:   3'- -ACGGCAGgGUaa---------CGC-CGUCG-CGUUAG- -5'
17085 5' -56.9 NC_004333.2 + 36079 0.67 0.493173
Target:  5'- aGCUGgCCCGUgacGCGGCGcuGCGCGc-- -3'
miRNA:   3'- aCGGCaGGGUAa--CGCCGU--CGCGUuag -5'
17085 5' -56.9 NC_004333.2 + 6608 0.67 0.472483
Target:  5'- cGCCG-CCCAgcGCcGCAGuCGCAGg- -3'
miRNA:   3'- aCGGCaGGGUaaCGcCGUC-GCGUUag -5'
17085 5' -56.9 NC_004333.2 + 22440 0.67 0.472483
Target:  5'- gGCCaUCCuCGgcGCGuGCGGCGCAGg- -3'
miRNA:   3'- aCGGcAGG-GUaaCGC-CGUCGCGUUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.