miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17085 5' -56.9 NC_004333.2 + 37690 0.67 0.472483
Target:  5'- gGCCGgCCCGgcgcGUGGCGGCuCAAUg -3'
miRNA:   3'- aCGGCaGGGUaa--CGCCGUCGcGUUAg -5'
17085 5' -56.9 NC_004333.2 + 18875 0.67 0.462304
Target:  5'- aGCaCGcgCCC--UGCGGCcGCGCGAUa -3'
miRNA:   3'- aCG-GCa-GGGuaACGCCGuCGCGUUAg -5'
17085 5' -56.9 NC_004333.2 + 35006 0.67 0.462304
Target:  5'- cUGCCGUaCCAUUGcCGGUcGCGCc--- -3'
miRNA:   3'- -ACGGCAgGGUAAC-GCCGuCGCGuuag -5'
17085 5' -56.9 NC_004333.2 + 345 0.68 0.442299
Target:  5'- cGCCGUgaCCGUgcuCGGCGGCGUGAc- -3'
miRNA:   3'- aCGGCAg-GGUAac-GCCGUCGCGUUag -5'
17085 5' -56.9 NC_004333.2 + 2077 0.68 0.442299
Target:  5'- -aCCGUCCuCGUUGUacGGCAGCG-AGUUg -3'
miRNA:   3'- acGGCAGG-GUAACG--CCGUCGCgUUAG- -5'
17085 5' -56.9 NC_004333.2 + 18126 0.68 0.432481
Target:  5'- gGUCGgacugCgCAgcaGCgGGCAGCGCGAUCa -3'
miRNA:   3'- aCGGCa----GgGUaa-CG-CCGUCGCGUUAG- -5'
17085 5' -56.9 NC_004333.2 + 2410 0.68 0.422793
Target:  5'- cGCCugGUCgCCGUacaGCGGCAGCGUg--- -3'
miRNA:   3'- aCGG--CAG-GGUAa--CGCCGUCGCGuuag -5'
17085 5' -56.9 NC_004333.2 + 23375 0.68 0.422793
Target:  5'- gUGCCG-CCCGUcagucCGGaCAGgGCGGUCa -3'
miRNA:   3'- -ACGGCaGGGUAac---GCC-GUCgCGUUAG- -5'
17085 5' -56.9 NC_004333.2 + 41132 0.68 0.413235
Target:  5'- gGCCGUUCCGcucacGCAGUGCGGUCu -3'
miRNA:   3'- aCGGCAGGGUaacgcCGUCGCGUUAG- -5'
17085 5' -56.9 NC_004333.2 + 18536 0.68 0.413235
Target:  5'- aGCCGgcggcaaCCCGggUGCGGCagccGGCGCGGc- -3'
miRNA:   3'- aCGGCa------GGGUa-ACGCCG----UCGCGUUag -5'
17085 5' -56.9 NC_004333.2 + 39318 0.68 0.413235
Target:  5'- aGCCGauUCgCucgGCGGCGGCGCGc-- -3'
miRNA:   3'- aCGGC--AGgGuaaCGCCGUCGCGUuag -5'
17085 5' -56.9 NC_004333.2 + 47683 0.68 0.403812
Target:  5'- gUGCCG-CCCAUcuCGGCGacGCGCAGc- -3'
miRNA:   3'- -ACGGCaGGGUAacGCCGU--CGCGUUag -5'
17085 5' -56.9 NC_004333.2 + 28216 0.69 0.394526
Target:  5'- cGCUGUCaaCCucgGCGGC-GCGCAGUa -3'
miRNA:   3'- aCGGCAG--GGuaaCGCCGuCGCGUUAg -5'
17085 5' -56.9 NC_004333.2 + 23221 0.69 0.394526
Target:  5'- cGCCGUCUugauCAcgGCGGCGaacGCGcCGGUCg -3'
miRNA:   3'- aCGGCAGG----GUaaCGCCGU---CGC-GUUAG- -5'
17085 5' -56.9 NC_004333.2 + 22849 0.69 0.385379
Target:  5'- cGCCcggaUUuuGUUGCGGCccggcgaucGGCGCGAUCg -3'
miRNA:   3'- aCGGc---AGggUAACGCCG---------UCGCGUUAG- -5'
17085 5' -56.9 NC_004333.2 + 2728 0.69 0.384472
Target:  5'- cUGCCGg--CGUUGCGGCugauacgccggcaAGCGCGAUg -3'
miRNA:   3'- -ACGGCaggGUAACGCCG-------------UCGCGUUAg -5'
17085 5' -56.9 NC_004333.2 + 4973 0.69 0.36751
Target:  5'- gGCCGagCC-UUGCGGCAG-GCAuauUCg -3'
miRNA:   3'- aCGGCagGGuAACGCCGUCgCGUu--AG- -5'
17085 5' -56.9 NC_004333.2 + 36183 0.7 0.339296
Target:  5'- gGCCGUCgCCAaccUUGCGuacguggcuggcgcGCAGCGCcgcGUCa -3'
miRNA:   3'- aCGGCAG-GGU---AACGC--------------CGUCGCGu--UAG- -5'
17085 5' -56.9 NC_004333.2 + 35883 0.7 0.325386
Target:  5'- aGCCGgCCCGUUGCGaC-GCGCAcgCc -3'
miRNA:   3'- aCGGCaGGGUAACGCcGuCGCGUuaG- -5'
17085 5' -56.9 NC_004333.2 + 27491 0.71 0.301885
Target:  5'- cGCCGcgaUCCAUUGCGuGCGGUugauguaaGCGAUCg -3'
miRNA:   3'- aCGGCa--GGGUAACGC-CGUCG--------CGUUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.