Results 1 - 20 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17086 | 3' | -56.3 | NC_004333.2 | + | 2577 | 0.66 | 0.632178 |
Target: 5'- cAUGUaCGUCGCGCccGaucucgaggCAGCGUCGa -3' miRNA: 3'- cUACG-GCAGCGCGuaCa--------GUCGCAGCa -5' |
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17086 | 3' | -56.3 | NC_004333.2 | + | 18401 | 0.66 | 0.602289 |
Target: 5'- cGUGCCGUCcgaaGCGCAacgccucgcgaucggCGGCGUCGa -3' miRNA: 3'- cUACGGCAG----CGCGUaca------------GUCGCAGCa -5' |
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17086 | 3' | -56.3 | NC_004333.2 | + | 23347 | 0.66 | 0.610027 |
Target: 5'- --gGCCGccugCGCGUuUGUgAGCGUCa- -3' miRNA: 3'- cuaCGGCa---GCGCGuACAgUCGCAGca -5' |
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17086 | 3' | -56.3 | NC_004333.2 | + | 33285 | 0.66 | 0.610027 |
Target: 5'- --aGCCGagCGCGCGcGUU-GCGUCGg -3' miRNA: 3'- cuaCGGCa-GCGCGUaCAGuCGCAGCa -5' |
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17086 | 3' | -56.3 | NC_004333.2 | + | 47952 | 0.66 | 0.610027 |
Target: 5'- -cUGCuCGgCGCGCuggucGUCGGCGUCa- -3' miRNA: 3'- cuACG-GCaGCGCGua---CAGUCGCAGca -5' |
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17086 | 3' | -56.3 | NC_004333.2 | + | 9352 | 0.66 | 0.621097 |
Target: 5'- --cGUCGUCgGCGCg---CGGCGUCGg -3' miRNA: 3'- cuaCGGCAG-CGCGuacaGUCGCAGCa -5' |
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17086 | 3' | -56.3 | NC_004333.2 | + | 27228 | 0.66 | 0.587953 |
Target: 5'- --cGCCGUCGUGaucg-CAGCGUCu- -3' miRNA: 3'- cuaCGGCAGCGCguacaGUCGCAGca -5' |
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17086 | 3' | -56.3 | NC_004333.2 | + | 42585 | 0.66 | 0.632178 |
Target: 5'- -uUGCCGucUCGCGCGUcuucgaugaucGUCAGCG-Ca- -3' miRNA: 3'- cuACGGC--AGCGCGUA-----------CAGUCGCaGca -5' |
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17086 | 3' | -56.3 | NC_004333.2 | + | 30395 | 0.66 | 0.610027 |
Target: 5'- uGcgGCCG-CGCGUAUGgcgggUGGUGUCGc -3' miRNA: 3'- -CuaCGGCaGCGCGUACa----GUCGCAGCa -5' |
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17086 | 3' | -56.3 | NC_004333.2 | + | 37219 | 0.66 | 0.608921 |
Target: 5'- gGAUGCCGcacgugaUCGCGuCGUG-CGGCGUg-- -3' miRNA: 3'- -CUACGGC-------AGCGC-GUACaGUCGCAgca -5' |
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17086 | 3' | -56.3 | NC_004333.2 | + | 16851 | 0.66 | 0.587953 |
Target: 5'- uGAUGaaGUCGCGguacgccuugcCGUGUCGGCGcagaUCGUc -3' miRNA: 3'- -CUACggCAGCGC-----------GUACAGUCGC----AGCA- -5' |
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17086 | 3' | -56.3 | NC_004333.2 | + | 2758 | 0.67 | 0.566029 |
Target: 5'- cGcgGCCGcCGUGCcgGUC-GCGuUCGUc -3' miRNA: 3'- -CuaCGGCaGCGCGuaCAGuCGC-AGCA- -5' |
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17086 | 3' | -56.3 | NC_004333.2 | + | 42291 | 0.68 | 0.460791 |
Target: 5'- --gGCCGUCGUGCG-GUCGaaGUCGa -3' miRNA: 3'- cuaCGGCAGCGCGUaCAGUcgCAGCa -5' |
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17086 | 3' | -56.3 | NC_004333.2 | + | 27623 | 0.68 | 0.501797 |
Target: 5'- cAUGCCGUUGCcaGCAUucacGggcaCAGCGUCGg -3' miRNA: 3'- cUACGGCAGCG--CGUA----Ca---GUCGCAGCa -5' |
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17086 | 3' | -56.3 | NC_004333.2 | + | 1831 | 0.68 | 0.500751 |
Target: 5'- --cGCCGUCGCuauaccaaaguguGCAgGcCGGUGUCGUg -3' miRNA: 3'- cuaCGGCAGCG-------------CGUaCaGUCGCAGCA- -5' |
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17086 | 3' | -56.3 | NC_004333.2 | + | 41491 | 0.68 | 0.491389 |
Target: 5'- --aGUCGgaGCGCGUGUUAgGCGUCGa -3' miRNA: 3'- cuaCGGCagCGCGUACAGU-CGCAGCa -5' |
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17086 | 3' | -56.3 | NC_004333.2 | + | 10191 | 0.68 | 0.470881 |
Target: 5'- aGAUGCaGUCGCGCAcgcgcaUG-CGGcCGUCGg -3' miRNA: 3'- -CUACGgCAGCGCGU------ACaGUC-GCAGCa -5' |
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17086 | 3' | -56.3 | NC_004333.2 | + | 13883 | 0.69 | 0.431232 |
Target: 5'- --cGCCGUCGCuGCGUcUCGcGCGUCa- -3' miRNA: 3'- cuaCGGCAGCG-CGUAcAGU-CGCAGca -5' |
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17086 | 3' | -56.3 | NC_004333.2 | + | 22724 | 0.7 | 0.393606 |
Target: 5'- --aGCCGuUCGCGCAUGguugCcugGGCGUCa- -3' miRNA: 3'- cuaCGGC-AGCGCGUACa---G---UCGCAGca -5' |
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17086 | 3' | -56.3 | NC_004333.2 | + | 23911 | 0.71 | 0.333105 |
Target: 5'- --aGCCGaacggCGCGUAcGUCAGCGUCu- -3' miRNA: 3'- cuaCGGCa----GCGCGUaCAGUCGCAGca -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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