miRNA display CGI


Results 1 - 20 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17086 5' -58.9 NC_004333.2 + 47566 0.66 0.527159
Target:  5'- gUCGCGccgGCCGGCGCcucguucagcGCGGCagucgccgccgGCGCGu -3'
miRNA:   3'- -AGUGCucaCGGCUGCG----------UGCCG-----------CGUGC- -5'
17086 5' -58.9 NC_004333.2 + 25278 0.66 0.527159
Target:  5'- gUCGCGGGcGUCGACGU-CGaGuCGCGCa -3'
miRNA:   3'- -AGUGCUCaCGGCUGCGuGC-C-GCGUGc -5'
17086 5' -58.9 NC_004333.2 + 41698 0.66 0.527159
Target:  5'- aCGCGGGcgGCaacuucgGGCgGCACGGCGCGa- -3'
miRNA:   3'- aGUGCUCa-CGg------CUG-CGUGCCGCGUgc -5'
17086 5' -58.9 NC_004333.2 + 84 0.66 0.516831
Target:  5'- aUCGCaGAGUGCCugccCGC-CGGUGCcCGu -3'
miRNA:   3'- -AGUG-CUCACGGcu--GCGuGCCGCGuGC- -5'
17086 5' -58.9 NC_004333.2 + 37752 0.66 0.516831
Target:  5'- aCGCGccGGgccgGCCGACGaGCgggucgGGCGCGCGc -3'
miRNA:   3'- aGUGC--UCa---CGGCUGCgUG------CCGCGUGC- -5'
17086 5' -58.9 NC_004333.2 + 28317 0.66 0.516831
Target:  5'- cCAgGAGcGCCG-CGCGCG-CGuCACGg -3'
miRNA:   3'- aGUgCUCaCGGCuGCGUGCcGC-GUGC- -5'
17086 5' -58.9 NC_004333.2 + 9695 0.66 0.516831
Target:  5'- gCGCGcc-GCCGGCaGC-CGGUGCGCa -3'
miRNA:   3'- aGUGCucaCGGCUG-CGuGCCGCGUGc -5'
17086 5' -58.9 NC_004333.2 + 6401 0.66 0.516831
Target:  5'- aUCGCGcGGUGCgGuCGUccucACGGCuGCGCa -3'
miRNA:   3'- -AGUGC-UCACGgCuGCG----UGCCG-CGUGc -5'
17086 5' -58.9 NC_004333.2 + 40639 0.66 0.513749
Target:  5'- cCACGcuGGUaucaggccgaagcgGCCGACGaacuguuCGGCGCACu -3'
miRNA:   3'- aGUGC--UCA--------------CGGCUGCgu-----GCCGCGUGc -5'
17086 5' -58.9 NC_004333.2 + 45014 0.66 0.506585
Target:  5'- gCGCGcAGgauagcUGCCGACuucuuCGGCGCGCGc -3'
miRNA:   3'- aGUGC-UC------ACGGCUGcgu--GCCGCGUGC- -5'
17086 5' -58.9 NC_004333.2 + 304 0.66 0.505565
Target:  5'- gCACGGcGUGgggcgacCCGACGCACauuuauGGCGCAa- -3'
miRNA:   3'- aGUGCU-CAC-------GGCUGCGUG------CCGCGUgc -5'
17086 5' -58.9 NC_004333.2 + 31220 0.66 0.496427
Target:  5'- gUugGucaUGCCGGuCGCgACGGCcGCGCGg -3'
miRNA:   3'- aGugCuc-ACGGCU-GCG-UGCCG-CGUGC- -5'
17086 5' -58.9 NC_004333.2 + 11810 0.66 0.496427
Target:  5'- gUACGAcgcgGCCaucaGCGCgACGGCGCGCu -3'
miRNA:   3'- aGUGCUca--CGGc---UGCG-UGCCGCGUGc -5'
17086 5' -58.9 NC_004333.2 + 20821 0.66 0.496427
Target:  5'- -aACGGGUagcggcuuccuGcCCGACGgGCGGcCGCGCa -3'
miRNA:   3'- agUGCUCA-----------C-GGCUGCgUGCC-GCGUGc -5'
17086 5' -58.9 NC_004333.2 + 44736 0.66 0.496427
Target:  5'- -gACGucuGUGCCGAUGCcGCGaugguugauGCGCAUGu -3'
miRNA:   3'- agUGCu--CACGGCUGCG-UGC---------CGCGUGC- -5'
17086 5' -58.9 NC_004333.2 + 39620 0.66 0.496427
Target:  5'- gUCACGAaaGUCGACGUcaacauCGGCGC-CGc -3'
miRNA:   3'- -AGUGCUcaCGGCUGCGu-----GCCGCGuGC- -5'
17086 5' -58.9 NC_004333.2 + 35382 0.66 0.496427
Target:  5'- gCACGAGUGCaguaaCGGCG-GCGGC-CACc -3'
miRNA:   3'- aGUGCUCACG-----GCUGCgUGCCGcGUGc -5'
17086 5' -58.9 NC_004333.2 + 6888 0.66 0.496427
Target:  5'- cCGCcgGAGUGCCGccguugcgacagGCGaagauCGGCGCGCu -3'
miRNA:   3'- aGUG--CUCACGGC------------UGCgu---GCCGCGUGc -5'
17086 5' -58.9 NC_004333.2 + 47959 0.66 0.496427
Target:  5'- gCGCGcuGGUcGUCGGCGUcaucgGCGGUGUGCGg -3'
miRNA:   3'- aGUGC--UCA-CGGCUGCG-----UGCCGCGUGC- -5'
17086 5' -58.9 NC_004333.2 + 19828 0.66 0.495416
Target:  5'- gUugGAGcgGCCGAuCGCgucguugacggcaGCGGCGC-CGu -3'
miRNA:   3'- aGugCUCa-CGGCU-GCG-------------UGCCGCGuGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.