Results 1 - 20 of 128 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17086 | 5' | -58.9 | NC_004333.2 | + | 47566 | 0.66 | 0.527159 |
Target: 5'- gUCGCGccgGCCGGCGCcucguucagcGCGGCagucgccgccgGCGCGu -3' miRNA: 3'- -AGUGCucaCGGCUGCG----------UGCCG-----------CGUGC- -5' |
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17086 | 5' | -58.9 | NC_004333.2 | + | 19828 | 0.66 | 0.495416 |
Target: 5'- gUugGAGcgGCCGAuCGCgucguugacggcaGCGGCGC-CGu -3' miRNA: 3'- aGugCUCa-CGGCU-GCG-------------UGCCGCGuGC- -5' |
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17086 | 5' | -58.9 | NC_004333.2 | + | 18270 | 0.66 | 0.486362 |
Target: 5'- aUUGCGA-UGCCGcGCGCACGacgaGCGCAUc -3' miRNA: 3'- -AGUGCUcACGGC-UGCGUGC----CGCGUGc -5' |
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17086 | 5' | -58.9 | NC_004333.2 | + | 41836 | 0.66 | 0.486362 |
Target: 5'- cUCGCucGUGCaGACccauaGCcCGGCGCGCGa -3' miRNA: 3'- -AGUGcuCACGgCUG-----CGuGCCGCGUGC- -5' |
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17086 | 5' | -58.9 | NC_004333.2 | + | 21250 | 0.66 | 0.476395 |
Target: 5'- cCcCGAGcagGCCGGCcUGCGGCaGCGCGa -3' miRNA: 3'- aGuGCUCa--CGGCUGcGUGCCG-CGUGC- -5' |
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17086 | 5' | -58.9 | NC_004333.2 | + | 37576 | 0.66 | 0.476395 |
Target: 5'- uUCACGuG-GCCGugGC-CGGCGg--- -3' miRNA: 3'- -AGUGCuCaCGGCugCGuGCCGCgugc -5' |
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17086 | 5' | -58.9 | NC_004333.2 | + | 8722 | 0.66 | 0.476395 |
Target: 5'- gUCACGAGcaaGCCGG-GCGCcGCGC-CGa -3' miRNA: 3'- -AGUGCUCa--CGGCUgCGUGcCGCGuGC- -5' |
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17086 | 5' | -58.9 | NC_004333.2 | + | 40929 | 0.66 | 0.476395 |
Target: 5'- gCGCGAccaucGCCGGCGaccagaaGGCGCGCGc -3' miRNA: 3'- aGUGCUca---CGGCUGCgug----CCGCGUGC- -5' |
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17086 | 5' | -58.9 | NC_004333.2 | + | 8621 | 0.66 | 0.476395 |
Target: 5'- gCACGAa-GCCGAUGCGCgacgucgagcucGGCGCGgCGc -3' miRNA: 3'- aGUGCUcaCGGCUGCGUG------------CCGCGU-GC- -5' |
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17086 | 5' | -58.9 | NC_004333.2 | + | 44736 | 0.66 | 0.496427 |
Target: 5'- -gACGucuGUGCCGAUGCcGCGaugguugauGCGCAUGu -3' miRNA: 3'- agUGCu--CACGGCUGCG-UGC---------CGCGUGC- -5' |
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17086 | 5' | -58.9 | NC_004333.2 | + | 39620 | 0.66 | 0.496427 |
Target: 5'- gUCACGAaaGUCGACGUcaacauCGGCGC-CGc -3' miRNA: 3'- -AGUGCUcaCGGCUGCGu-----GCCGCGuGC- -5' |
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17086 | 5' | -58.9 | NC_004333.2 | + | 35382 | 0.66 | 0.496427 |
Target: 5'- gCACGAGUGCaguaaCGGCG-GCGGC-CACc -3' miRNA: 3'- aGUGCUCACG-----GCUGCgUGCCGcGUGc -5' |
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17086 | 5' | -58.9 | NC_004333.2 | + | 25278 | 0.66 | 0.527159 |
Target: 5'- gUCGCGGGcGUCGACGU-CGaGuCGCGCa -3' miRNA: 3'- -AGUGCUCaCGGCUGCGuGC-C-GCGUGc -5' |
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17086 | 5' | -58.9 | NC_004333.2 | + | 6401 | 0.66 | 0.516831 |
Target: 5'- aUCGCGcGGUGCgGuCGUccucACGGCuGCGCa -3' miRNA: 3'- -AGUGC-UCACGgCuGCG----UGCCG-CGUGc -5' |
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17086 | 5' | -58.9 | NC_004333.2 | + | 9695 | 0.66 | 0.516831 |
Target: 5'- gCGCGcc-GCCGGCaGC-CGGUGCGCa -3' miRNA: 3'- aGUGCucaCGGCUG-CGuGCCGCGUGc -5' |
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17086 | 5' | -58.9 | NC_004333.2 | + | 28317 | 0.66 | 0.516831 |
Target: 5'- cCAgGAGcGCCG-CGCGCG-CGuCACGg -3' miRNA: 3'- aGUgCUCaCGGCuGCGUGCcGC-GUGC- -5' |
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17086 | 5' | -58.9 | NC_004333.2 | + | 37752 | 0.66 | 0.516831 |
Target: 5'- aCGCGccGGgccgGCCGACGaGCgggucgGGCGCGCGc -3' miRNA: 3'- aGUGC--UCa---CGGCUGCgUG------CCGCGUGC- -5' |
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17086 | 5' | -58.9 | NC_004333.2 | + | 45014 | 0.66 | 0.506585 |
Target: 5'- gCGCGcAGgauagcUGCCGACuucuuCGGCGCGCGc -3' miRNA: 3'- aGUGC-UC------ACGGCUGcgu--GCCGCGUGC- -5' |
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17086 | 5' | -58.9 | NC_004333.2 | + | 304 | 0.66 | 0.505565 |
Target: 5'- gCACGGcGUGgggcgacCCGACGCACauuuauGGCGCAa- -3' miRNA: 3'- aGUGCU-CAC-------GGCUGCGUG------CCGCGUgc -5' |
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17086 | 5' | -58.9 | NC_004333.2 | + | 6888 | 0.66 | 0.496427 |
Target: 5'- cCGCcgGAGUGCCGccguugcgacagGCGaagauCGGCGCGCu -3' miRNA: 3'- aGUG--CUCACGGC------------UGCgu---GCCGCGUGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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