miRNA display CGI


Results 1 - 20 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17086 5' -58.9 NC_004333.2 + 39156 1.09 0.000405
Target:  5'- uUCACGAGUGCCGACGCACGGCGCACGa -3'
miRNA:   3'- -AGUGCUCACGGCUGCGUGCCGCGUGC- -5'
17086 5' -58.9 NC_004333.2 + 32527 0.78 0.082267
Target:  5'- -aGCGuuUGCCGAcguCGCGCGGCGCGCu -3'
miRNA:   3'- agUGCucACGGCU---GCGUGCCGCGUGc -5'
17086 5' -58.9 NC_004333.2 + 37468 0.78 0.08947
Target:  5'- cCGCGAGcGCCGACGUaggacgaugaggACGGCcGCGCGa -3'
miRNA:   3'- aGUGCUCaCGGCUGCG------------UGCCG-CGUGC- -5'
17086 5' -58.9 NC_004333.2 + 41304 0.77 0.09727
Target:  5'- -gACGAG-GCCGAgcuCGCcCGGCGCGCGa -3'
miRNA:   3'- agUGCUCaCGGCU---GCGuGCCGCGUGC- -5'
17086 5' -58.9 NC_004333.2 + 21788 0.77 0.10571
Target:  5'- gCGuCGAGcUGCUGGCGCACGuGCGCAUa -3'
miRNA:   3'- aGU-GCUC-ACGGCUGCGUGC-CGCGUGc -5'
17086 5' -58.9 NC_004333.2 + 9057 0.76 0.108673
Target:  5'- cCGCGucGGUcGCCGccGCGCACGGCcGCACGa -3'
miRNA:   3'- aGUGC--UCA-CGGC--UGCGUGCCG-CGUGC- -5'
17086 5' -58.9 NC_004333.2 + 41741 0.76 0.108673
Target:  5'- gCACGAGgauauucuccuUGCCGGCGUACGGC-CGCa -3'
miRNA:   3'- aGUGCUC-----------ACGGCUGCGUGCCGcGUGc -5'
17086 5' -58.9 NC_004333.2 + 25946 0.75 0.131331
Target:  5'- gCGCGA-UGCCGGCGgccaguaCGCGGCGCugGa -3'
miRNA:   3'- aGUGCUcACGGCUGC-------GUGCCGCGugC- -5'
17086 5' -58.9 NC_004333.2 + 39255 0.74 0.159129
Target:  5'- cCcCGAGcgGCCGgcagGCGCACGcGCGCGCGa -3'
miRNA:   3'- aGuGCUCa-CGGC----UGCGUGC-CGCGUGC- -5'
17086 5' -58.9 NC_004333.2 + 13961 0.74 0.159129
Target:  5'- cCGCGcagcccGUGCCGGCcgacuucgcgcgGCGCGGCGCGCu -3'
miRNA:   3'- aGUGCu-----CACGGCUG------------CGUGCCGCGUGc -5'
17086 5' -58.9 NC_004333.2 + 46923 0.74 0.167423
Target:  5'- cCGCGAGcGCCGcgaagccucgcGCGCagccaagGCGGCGCGCGc -3'
miRNA:   3'- aGUGCUCaCGGC-----------UGCG-------UGCCGCGUGC- -5'
17086 5' -58.9 NC_004333.2 + 30497 0.73 0.177039
Target:  5'- gCGCGAG-GCaGuCGCuACGGCGCGCGa -3'
miRNA:   3'- aGUGCUCaCGgCuGCG-UGCCGCGUGC- -5'
17086 5' -58.9 NC_004333.2 + 29960 0.73 0.181788
Target:  5'- -aGCGcGUGCCGA-GCGCGGcCGCGCu -3'
miRNA:   3'- agUGCuCACGGCUgCGUGCC-GCGUGc -5'
17086 5' -58.9 NC_004333.2 + 46848 0.73 0.181788
Target:  5'- cUugGAcGUGCCGAgcaGCGCGGCGgACa -3'
miRNA:   3'- aGugCU-CACGGCUg--CGUGCCGCgUGc -5'
17086 5' -58.9 NC_004333.2 + 38947 0.73 0.181788
Target:  5'- gCGCGGGUGCgCgGACGgGCGGCGUuCGu -3'
miRNA:   3'- aGUGCUCACG-G-CUGCgUGCCGCGuGC- -5'
17086 5' -58.9 NC_004333.2 + 17709 0.73 0.196718
Target:  5'- uUCGCGAacGUGUCGGC-CACGGCaccggGCGCGg -3'
miRNA:   3'- -AGUGCU--CACGGCUGcGUGCCG-----CGUGC- -5'
17086 5' -58.9 NC_004333.2 + 19550 0.72 0.207257
Target:  5'- -gAUGGGcGCCGGuCGCACGGUcgGCGCGg -3'
miRNA:   3'- agUGCUCaCGGCU-GCGUGCCG--CGUGC- -5'
17086 5' -58.9 NC_004333.2 + 2371 0.72 0.218281
Target:  5'- aCGCGGgcGUGCCGGC-CACGGUaCACGa -3'
miRNA:   3'- aGUGCU--CACGGCUGcGUGCCGcGUGC- -5'
17086 5' -58.9 NC_004333.2 + 33441 0.72 0.229214
Target:  5'- cCGCGAGU-CCGGCaGCauuggcaGCGGCGCGCc -3'
miRNA:   3'- aGUGCUCAcGGCUG-CG-------UGCCGCGUGc -5'
17086 5' -58.9 NC_004333.2 + 5519 0.72 0.229802
Target:  5'- uUCGCGGGgauauaggucaUGCCGugGC-CGGCG-ACGg -3'
miRNA:   3'- -AGUGCUC-----------ACGGCugCGuGCCGCgUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.