miRNA display CGI


Results 21 - 40 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17086 5' -58.9 NC_004333.2 + 28989 0.66 0.486362
Target:  5'- gCGCGGccGCCGggucggcguGCGCAUcGCGCGCGg -3'
miRNA:   3'- aGUGCUcaCGGC---------UGCGUGcCGCGUGC- -5'
17086 5' -58.9 NC_004333.2 + 18270 0.66 0.486362
Target:  5'- aUUGCGA-UGCCGcGCGCACGacgaGCGCAUc -3'
miRNA:   3'- -AGUGCUcACGGC-UGCGUGC----CGCGUGc -5'
17086 5' -58.9 NC_004333.2 + 41836 0.66 0.486362
Target:  5'- cUCGCucGUGCaGACccauaGCcCGGCGCGCGa -3'
miRNA:   3'- -AGUGcuCACGgCUG-----CGuGCCGCGUGC- -5'
17086 5' -58.9 NC_004333.2 + 21250 0.66 0.476395
Target:  5'- cCcCGAGcagGCCGGCcUGCGGCaGCGCGa -3'
miRNA:   3'- aGuGCUCa--CGGCUGcGUGCCG-CGUGC- -5'
17086 5' -58.9 NC_004333.2 + 42694 0.66 0.476395
Target:  5'- cCACGccgGCCGACGagcggGCGGCGUuCGa -3'
miRNA:   3'- aGUGCucaCGGCUGCg----UGCCGCGuGC- -5'
17086 5' -58.9 NC_004333.2 + 37576 0.66 0.476395
Target:  5'- uUCACGuG-GCCGugGC-CGGCGg--- -3'
miRNA:   3'- -AGUGCuCaCGGCugCGuGCCGCgugc -5'
17086 5' -58.9 NC_004333.2 + 41342 0.66 0.476395
Target:  5'- gCGCGAGUGUguACGUGUGGCGCuCGa -3'
miRNA:   3'- aGUGCUCACGgcUGCGUGCCGCGuGC- -5'
17086 5' -58.9 NC_004333.2 + 8621 0.66 0.476395
Target:  5'- gCACGAa-GCCGAUGCGCgacgucgagcucGGCGCGgCGc -3'
miRNA:   3'- aGUGCUcaCGGCUGCGUG------------CCGCGU-GC- -5'
17086 5' -58.9 NC_004333.2 + 8722 0.66 0.476395
Target:  5'- gUCACGAGcaaGCCGG-GCGCcGCGC-CGa -3'
miRNA:   3'- -AGUGCUCa--CGGCUgCGUGcCGCGuGC- -5'
17086 5' -58.9 NC_004333.2 + 40929 0.66 0.476395
Target:  5'- gCGCGAccaucGCCGGCGaccagaaGGCGCGCGc -3'
miRNA:   3'- aGUGCUca---CGGCUGCgug----CCGCGUGC- -5'
17086 5' -58.9 NC_004333.2 + 45640 0.66 0.476395
Target:  5'- aUCACGuucGUGaagGACGCGCGcGCGCuGCGc -3'
miRNA:   3'- -AGUGCu--CACgg-CUGCGUGC-CGCG-UGC- -5'
17086 5' -58.9 NC_004333.2 + 31292 0.67 0.467511
Target:  5'- -gGCGAGaccggccgcaccugcGCCGACGCcgagcACGGCGCcCGc -3'
miRNA:   3'- agUGCUCa--------------CGGCUGCG-----UGCCGCGuGC- -5'
17086 5' -58.9 NC_004333.2 + 47843 0.67 0.46653
Target:  5'- cUUugGAGgugaGCaUGugGCuCGGCGCGCu -3'
miRNA:   3'- -AGugCUCa---CG-GCugCGuGCCGCGUGc -5'
17086 5' -58.9 NC_004333.2 + 7405 0.67 0.46653
Target:  5'- gUCGCc-GUGUccuugccuuCGACGCGCGGCGCcCa -3'
miRNA:   3'- -AGUGcuCACG---------GCUGCGUGCCGCGuGc -5'
17086 5' -58.9 NC_004333.2 + 388 0.67 0.46653
Target:  5'- aCA-GAGuUGCCGA-GCGCGuagaGCGCGCGa -3'
miRNA:   3'- aGUgCUC-ACGGCUgCGUGC----CGCGUGC- -5'
17086 5' -58.9 NC_004333.2 + 40108 0.67 0.46653
Target:  5'- cUUGCGAGgcguccgcGCCGugGCGCcGCGCGa- -3'
miRNA:   3'- -AGUGCUCa-------CGGCugCGUGcCGCGUgc -5'
17086 5' -58.9 NC_004333.2 + 47199 0.67 0.46653
Target:  5'- gCACGAGgcacaaGUCGcCGCGacgGGCGCGCu -3'
miRNA:   3'- aGUGCUCa-----CGGCuGCGUg--CCGCGUGc -5'
17086 5' -58.9 NC_004333.2 + 30380 0.67 0.46653
Target:  5'- -gGCGGGUGgUGuCGCA-GGCGCgACGg -3'
miRNA:   3'- agUGCUCACgGCuGCGUgCCGCG-UGC- -5'
17086 5' -58.9 NC_004333.2 + 29974 0.67 0.46653
Target:  5'- --cCGAGgaUGCCG-CGCGCGGCccgaucGCGCa -3'
miRNA:   3'- aguGCUC--ACGGCuGCGUGCCG------CGUGc -5'
17086 5' -58.9 NC_004333.2 + 27537 0.67 0.46653
Target:  5'- aUCGCaAGUGCCG-CGC-CGGgGCGa- -3'
miRNA:   3'- -AGUGcUCACGGCuGCGuGCCgCGUgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.