miRNA display CGI


Results 1 - 20 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17086 5' -58.9 NC_004333.2 + 84 0.66 0.516831
Target:  5'- aUCGCaGAGUGCCugccCGC-CGGUGCcCGu -3'
miRNA:   3'- -AGUG-CUCACGGcu--GCGuGCCGCGuGC- -5'
17086 5' -58.9 NC_004333.2 + 304 0.66 0.505565
Target:  5'- gCACGGcGUGgggcgacCCGACGCACauuuauGGCGCAa- -3'
miRNA:   3'- aGUGCU-CAC-------GGCUGCGUG------CCGCGUgc -5'
17086 5' -58.9 NC_004333.2 + 388 0.67 0.46653
Target:  5'- aCA-GAGuUGCCGA-GCGCGuagaGCGCGCGa -3'
miRNA:   3'- aGUgCUC-ACGGCUgCGUGC----CGCGUGC- -5'
17086 5' -58.9 NC_004333.2 + 698 0.67 0.447124
Target:  5'- gCGCGAucGUGCCGcCGCccGCGaGCGC-CGu -3'
miRNA:   3'- aGUGCU--CACGGCuGCG--UGC-CGCGuGC- -5'
17086 5' -58.9 NC_004333.2 + 794 0.67 0.418881
Target:  5'- cCuuGAgcGUGCCGGuCGC-CGGCGCAgGa -3'
miRNA:   3'- aGugCU--CACGGCU-GCGuGCCGCGUgC- -5'
17086 5' -58.9 NC_004333.2 + 1260 0.71 0.248041
Target:  5'- gCAUGAcGUGCUccuuGGCGCGCcgccuGGCGCGCGu -3'
miRNA:   3'- aGUGCU-CACGG----CUGCGUG-----CCGCGUGC- -5'
17086 5' -58.9 NC_004333.2 + 2371 0.72 0.218281
Target:  5'- aCGCGGgcGUGCCGGC-CACGGUaCACGa -3'
miRNA:   3'- aGUGCU--CACGGCUGcGUGCCGcGUGC- -5'
17086 5' -58.9 NC_004333.2 + 3194 0.69 0.325219
Target:  5'- gCACGAGgccggugaGCCGGC-C-CGGCGCGCc -3'
miRNA:   3'- aGUGCUCa-------CGGCUGcGuGCCGCGUGc -5'
17086 5' -58.9 NC_004333.2 + 3633 0.67 0.428175
Target:  5'- cUAUGuGgucgGCCGACGCGCuGCGCGg- -3'
miRNA:   3'- aGUGCuCa---CGGCUGCGUGcCGCGUgc -5'
17086 5' -58.9 NC_004333.2 + 4345 0.7 0.288094
Target:  5'- gCACGAuguuGUGUCGAC-CG-GGCGCACGa -3'
miRNA:   3'- aGUGCU----CACGGCUGcGUgCCGCGUGC- -5'
17086 5' -58.9 NC_004333.2 + 4645 0.68 0.374306
Target:  5'- aUCGCGAucaUGgCGACggGCAggcCGGCGCGCGg -3'
miRNA:   3'- -AGUGCUc--ACgGCUG--CGU---GCCGCGUGC- -5'
17086 5' -58.9 NC_004333.2 + 5519 0.72 0.229802
Target:  5'- uUCGCGGGgauauaggucaUGCCGugGC-CGGCG-ACGg -3'
miRNA:   3'- -AGUGCUC-----------ACGGCugCGuGCCGCgUGC- -5'
17086 5' -58.9 NC_004333.2 + 6401 0.66 0.516831
Target:  5'- aUCGCGcGGUGCgGuCGUccucACGGCuGCGCa -3'
miRNA:   3'- -AGUGC-UCACGgCuGCG----UGCCG-CGUGc -5'
17086 5' -58.9 NC_004333.2 + 6677 0.68 0.400664
Target:  5'- -uGCGAcUG-CGGCGCugGGCgGCGCGc -3'
miRNA:   3'- agUGCUcACgGCUGCGugCCG-CGUGC- -5'
17086 5' -58.9 NC_004333.2 + 6888 0.66 0.496427
Target:  5'- cCGCcgGAGUGCCGccguugcgacagGCGaagauCGGCGCGCu -3'
miRNA:   3'- aGUG--CUCACGGC------------UGCgu---GCCGCGUGc -5'
17086 5' -58.9 NC_004333.2 + 7405 0.67 0.46653
Target:  5'- gUCGCc-GUGUccuugccuuCGACGCGCGGCGCcCa -3'
miRNA:   3'- -AGUGcuCACG---------GCUGCGUGCCGCGuGc -5'
17086 5' -58.9 NC_004333.2 + 7925 0.69 0.357399
Target:  5'- gCGCGAGcuggaaaugGCCGGCGCA-GGC-CGCGu -3'
miRNA:   3'- aGUGCUCa--------CGGCUGCGUgCCGcGUGC- -5'
17086 5' -58.9 NC_004333.2 + 8621 0.66 0.476395
Target:  5'- gCACGAa-GCCGAUGCGCgacgucgagcucGGCGCGgCGc -3'
miRNA:   3'- aGUGCUcaCGGCUGCGUG------------CCGCGU-GC- -5'
17086 5' -58.9 NC_004333.2 + 8722 0.66 0.476395
Target:  5'- gUCACGAGcaaGCCGG-GCGCcGCGC-CGa -3'
miRNA:   3'- -AGUGCUCa--CGGCUgCGUGcCGCGuGC- -5'
17086 5' -58.9 NC_004333.2 + 9057 0.76 0.108673
Target:  5'- cCGCGucGGUcGCCGccGCGCACGGCcGCACGa -3'
miRNA:   3'- aGUGC--UCA-CGGC--UGCGUGCCG-CGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.