miRNA display CGI


Results 1 - 20 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17086 5' -58.9 NC_004333.2 + 32527 0.78 0.082267
Target:  5'- -aGCGuuUGCCGAcguCGCGCGGCGCGCu -3'
miRNA:   3'- agUGCucACGGCU---GCGUGCCGCGUGc -5'
17086 5' -58.9 NC_004333.2 + 22347 0.7 0.295243
Target:  5'- cCACGAGgaaGCCGACGaaaccuGCGcCGCACGc -3'
miRNA:   3'- aGUGCUCa--CGGCUGCg-----UGCcGCGUGC- -5'
17086 5' -58.9 NC_004333.2 + 9344 0.69 0.317518
Target:  5'- uUCAUGcucGUcGUCGGCGCGCGGCGU-CGg -3'
miRNA:   3'- -AGUGCu--CA-CGGCUGCGUGCCGCGuGC- -5'
17086 5' -58.9 NC_004333.2 + 41698 0.66 0.527159
Target:  5'- aCGCGGGcgGCaacuucgGGCgGCACGGCGCGa- -3'
miRNA:   3'- aGUGCUCa-CGg------CUG-CGUGCCGCGUgc -5'
17086 5' -58.9 NC_004333.2 + 46923 0.74 0.167423
Target:  5'- cCGCGAGcGCCGcgaagccucgcGCGCagccaagGCGGCGCGCGc -3'
miRNA:   3'- aGUGCUCaCGGC-----------UGCG-------UGCCGCGUGC- -5'
17086 5' -58.9 NC_004333.2 + 29960 0.73 0.181788
Target:  5'- -aGCGcGUGCCGA-GCGCGGcCGCGCu -3'
miRNA:   3'- agUGCuCACGGCUgCGUGCC-GCGUGc -5'
17086 5' -58.9 NC_004333.2 + 33441 0.72 0.229214
Target:  5'- cCGCGAGU-CCGGCaGCauuggcaGCGGCGCGCc -3'
miRNA:   3'- aGUGCUCAcGGCUG-CG-------UGCCGCGUGc -5'
17086 5' -58.9 NC_004333.2 + 5519 0.72 0.229802
Target:  5'- uUCGCGGGgauauaggucaUGCCGugGC-CGGCG-ACGg -3'
miRNA:   3'- -AGUGCUC-----------ACGGCugCGuGCCGCgUGC- -5'
17086 5' -58.9 NC_004333.2 + 1260 0.71 0.248041
Target:  5'- gCAUGAcGUGCUccuuGGCGCGCcgccuGGCGCGCGu -3'
miRNA:   3'- aGUGCU-CACGG----CUGCGUG-----CCGCGUGC- -5'
17086 5' -58.9 NC_004333.2 + 42114 0.7 0.28108
Target:  5'- gUCGCGAGgugcGCCaGuuGC-CGGUGCACGa -3'
miRNA:   3'- -AGUGCUCa---CGG-CugCGuGCCGCGUGC- -5'
17086 5' -58.9 NC_004333.2 + 13125 0.71 0.260856
Target:  5'- aUCGCGAGcugcgucaUGCUGAUGC-CGGCGaACGa -3'
miRNA:   3'- -AGUGCUC--------ACGGCUGCGuGCCGCgUGC- -5'
17086 5' -58.9 NC_004333.2 + 9189 0.71 0.241832
Target:  5'- uUCGCGAcggcaGUGUCGAU-CGCGGUGCGCa -3'
miRNA:   3'- -AGUGCU-----CACGGCUGcGUGCCGCGUGc -5'
17086 5' -58.9 NC_004333.2 + 41304 0.77 0.09727
Target:  5'- -gACGAG-GCCGAgcuCGCcCGGCGCGCGa -3'
miRNA:   3'- agUGCUCaCGGCU---GCGuGCCGCGUGC- -5'
17086 5' -58.9 NC_004333.2 + 11890 0.7 0.279003
Target:  5'- gCGCGAGcaccuUGUCGucgcggcccggcauGCGCAgCGGCGCGCGc -3'
miRNA:   3'- aGUGCUC-----ACGGC--------------UGCGU-GCCGCGUGC- -5'
17086 5' -58.9 NC_004333.2 + 25946 0.75 0.131331
Target:  5'- gCGCGA-UGCCGGCGgccaguaCGCGGCGCugGa -3'
miRNA:   3'- aGUGCUcACGGCUGC-------GUGCCGCGugC- -5'
17086 5' -58.9 NC_004333.2 + 28235 0.71 0.235152
Target:  5'- gUCACG-GUGaCCGugacgcGCGCGCGGCGCuccuggaACGg -3'
miRNA:   3'- -AGUGCuCAC-GGC------UGCGUGCCGCG-------UGC- -5'
17086 5' -58.9 NC_004333.2 + 20955 0.7 0.28108
Target:  5'- cCACG-G-GCCGgacgcaaacGCGCGCGGCGCggGCGa -3'
miRNA:   3'- aGUGCuCaCGGC---------UGCGUGCCGCG--UGC- -5'
17086 5' -58.9 NC_004333.2 + 28756 0.7 0.302531
Target:  5'- gCGCGAGcGCCGcgucgaccGCGCgggucGCGGCgGCGCGa -3'
miRNA:   3'- aGUGCUCaCGGC--------UGCG-----UGCCG-CGUGC- -5'
17086 5' -58.9 NC_004333.2 + 39255 0.74 0.159129
Target:  5'- cCcCGAGcgGCCGgcagGCGCACGcGCGCGCGa -3'
miRNA:   3'- aGuGCUCa-CGGC----UGCGUGC-CGCGUGC- -5'
17086 5' -58.9 NC_004333.2 + 19550 0.72 0.207257
Target:  5'- -gAUGGGcGCCGGuCGCACGGUcgGCGCGg -3'
miRNA:   3'- agUGCUCaCGGCU-GCGUGCCG--CGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.