miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17087 3' -51.4 NC_004333.2 + 1182 0.66 0.922043
Target:  5'- aCCGACUUcgCG-CGCGAcuG-CGACGu -3'
miRNA:   3'- -GGCUGGGuaGCaGUGCUuuCaGCUGC- -5'
17087 3' -51.4 NC_004333.2 + 40702 0.66 0.915885
Target:  5'- aCCaACCCgAUCGcCGCGAucGUCaccGGCGg -3'
miRNA:   3'- -GGcUGGG-UAGCaGUGCUuuCAG---CUGC- -5'
17087 3' -51.4 NC_004333.2 + 9759 0.66 0.909445
Target:  5'- gCGcGCCCGUCGUCaACGAGcgccacauGGUUGccACGg -3'
miRNA:   3'- gGC-UGGGUAGCAG-UGCUU--------UCAGC--UGC- -5'
17087 3' -51.4 NC_004333.2 + 14170 0.66 0.909445
Target:  5'- aCCGGCCCGaugccgggucgcUCGUCGgGAug--CGGCa -3'
miRNA:   3'- -GGCUGGGU------------AGCAGUgCUuucaGCUGc -5'
17087 3' -51.4 NC_004333.2 + 29053 0.66 0.909445
Target:  5'- gCCG-CCCA-CGaUCGCGccGAGUUGGCGc -3'
miRNA:   3'- -GGCuGGGUaGC-AGUGCu-UUCAGCUGC- -5'
17087 3' -51.4 NC_004333.2 + 19090 0.66 0.895731
Target:  5'- gCGGCCCGUgugacCGUCACGAuucuuucAGcUUGACa -3'
miRNA:   3'- gGCUGGGUA-----GCAGUGCUu------UC-AGCUGc -5'
17087 3' -51.4 NC_004333.2 + 19819 0.66 0.895731
Target:  5'- gCCGAUCgCGUCGUUgACGgcAG-CGGCGc -3'
miRNA:   3'- -GGCUGG-GUAGCAG-UGCuuUCaGCUGC- -5'
17087 3' -51.4 NC_004333.2 + 22322 0.67 0.883976
Target:  5'- -aGACCCGaggcguggcacaacuUCGcCACGAggAAGcCGACGa -3'
miRNA:   3'- ggCUGGGU---------------AGCaGUGCU--UUCaGCUGC- -5'
17087 3' -51.4 NC_004333.2 + 41265 0.67 0.88093
Target:  5'- aUCGACaCCGaaggCGUCaagACGAAGGgCGGCGa -3'
miRNA:   3'- -GGCUG-GGUa---GCAG---UGCUUUCaGCUGC- -5'
17087 3' -51.4 NC_004333.2 + 38646 0.67 0.873135
Target:  5'- aUCGGCCCGggCGgCACGGgcAAGUCGuACu -3'
miRNA:   3'- -GGCUGGGUa-GCaGUGCU--UUCAGC-UGc -5'
17087 3' -51.4 NC_004333.2 + 30667 0.67 0.873135
Target:  5'- uCCGGCCUGggGUUucucgGCGAAgcGGUCGAUGu -3'
miRNA:   3'- -GGCUGGGUagCAG-----UGCUU--UCAGCUGC- -5'
17087 3' -51.4 NC_004333.2 + 8659 0.67 0.865084
Target:  5'- cCCGGCUUGcUCGUgACGGugccGUCGGCGu -3'
miRNA:   3'- -GGCUGGGU-AGCAgUGCUuu--CAGCUGC- -5'
17087 3' -51.4 NC_004333.2 + 35542 0.67 0.856786
Target:  5'- aCCGGCCCGUUG--ACGGugccgacGUUGACGg -3'
miRNA:   3'- -GGCUGGGUAGCagUGCUuu-----CAGCUGC- -5'
17087 3' -51.4 NC_004333.2 + 30856 0.68 0.848247
Target:  5'- aUGGCgaaCGUCGUCAUGAcGGUCGcCGc -3'
miRNA:   3'- gGCUGg--GUAGCAGUGCUuUCAGCuGC- -5'
17087 3' -51.4 NC_004333.2 + 29846 0.68 0.84564
Target:  5'- gUCGACUgAUCGUUcgcaGCGAAGcgcgcgcgguagucGUCGGCGa -3'
miRNA:   3'- -GGCUGGgUAGCAG----UGCUUU--------------CAGCUGC- -5'
17087 3' -51.4 NC_004333.2 + 2030 0.68 0.839476
Target:  5'- aCGGCCgCAUCGaUCACG----UCGACGc -3'
miRNA:   3'- gGCUGG-GUAGC-AGUGCuuucAGCUGC- -5'
17087 3' -51.4 NC_004333.2 + 26875 0.68 0.830482
Target:  5'- gCCGGgCCGUCGgcaACGAAGcgcgccuacucGUCGGCa -3'
miRNA:   3'- -GGCUgGGUAGCag-UGCUUU-----------CAGCUGc -5'
17087 3' -51.4 NC_004333.2 + 33100 0.68 0.821276
Target:  5'- aCGAgCCCuUCGUCGCGcccuugcagaugGAAGUCGGUGg -3'
miRNA:   3'- gGCU-GGGuAGCAGUGC------------UUUCAGCUGC- -5'
17087 3' -51.4 NC_004333.2 + 10224 0.68 0.821276
Target:  5'- gUGaACCCGUaucgcgGUCGCGAAguGGUCGGCu -3'
miRNA:   3'- gGC-UGGGUAg-----CAGUGCUU--UCAGCUGc -5'
17087 3' -51.4 NC_004333.2 + 44920 0.68 0.811865
Target:  5'- cUCGAUgCGUCGcgCGCGccgaaGAAGUCGGCa -3'
miRNA:   3'- -GGCUGgGUAGCa-GUGC-----UUUCAGCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.