miRNA display CGI


Results 1 - 20 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17087 5' -51.3 NC_004333.2 + 6662 0.66 0.903812
Target:  5'- gGGCGgCGC-GCCG-UGgcggCGAUGcgGGCu -3'
miRNA:   3'- -CCGCgGCGuUGGCuACa---GCUAUa-UCG- -5'
17087 5' -51.3 NC_004333.2 + 41064 0.66 0.903812
Target:  5'- cGCGCCGCcaauCCGcacGUG-CGGUuuguUGGCa -3'
miRNA:   3'- cCGCGGCGuu--GGC---UACaGCUAu---AUCG- -5'
17087 5' -51.3 NC_004333.2 + 33043 0.66 0.903812
Target:  5'- aGCGCCGCAcguGCguaGcgGUCGGccacgAGCg -3'
miRNA:   3'- cCGCGGCGU---UGg--CuaCAGCUaua--UCG- -5'
17087 5' -51.3 NC_004333.2 + 27490 0.66 0.903812
Target:  5'- -cCGCCGCGAUCcauugcguGcgGUUGAUGUaAGCg -3'
miRNA:   3'- ccGCGGCGUUGG--------CuaCAGCUAUA-UCG- -5'
17087 5' -51.3 NC_004333.2 + 32925 0.66 0.903812
Target:  5'- cGGUGCCGCGACaaAUGgcagcaGGUA-GGCg -3'
miRNA:   3'- -CCGCGGCGUUGgcUACag----CUAUaUCG- -5'
17087 5' -51.3 NC_004333.2 + 2724 0.66 0.903812
Target:  5'- cGGCGuuGCGGCUGAUacGcCGGca-AGCg -3'
miRNA:   3'- -CCGCggCGUUGGCUA--CaGCUauaUCG- -5'
17087 5' -51.3 NC_004333.2 + 22681 0.66 0.899598
Target:  5'- aGGCGCgacgaacccgacggaCGCGaacaacacgagcGCCGAUGUCGugacgacGGCg -3'
miRNA:   3'- -CCGCG---------------GCGU------------UGGCUACAGCuaua---UCG- -5'
17087 5' -51.3 NC_004333.2 + 38590 0.66 0.896732
Target:  5'- cGCGUCGCAcagAUCGAcaaagaacgUGUCGA---GGCg -3'
miRNA:   3'- cCGCGGCGU---UGGCU---------ACAGCUauaUCG- -5'
17087 5' -51.3 NC_004333.2 + 5146 0.66 0.896732
Target:  5'- gGGCgaGCCGC--CCGuguUGUCGAgc-AGCg -3'
miRNA:   3'- -CCG--CGGCGuuGGCu--ACAGCUauaUCG- -5'
17087 5' -51.3 NC_004333.2 + 24311 0.66 0.896732
Target:  5'- uGGaacaGCCGCGACCGAc--CGAgaauGCg -3'
miRNA:   3'- -CCg---CGGCGUUGGCUacaGCUauauCG- -5'
17087 5' -51.3 NC_004333.2 + 45099 0.66 0.896732
Target:  5'- cGCGCCGcCAGCgccacgCGcgGUCGAgc-GGCc -3'
miRNA:   3'- cCGCGGC-GUUG------GCuaCAGCUauaUCG- -5'
17087 5' -51.3 NC_004333.2 + 20956 0.66 0.895282
Target:  5'- cGCGCUGC-GCCGGgcucGUCGccgcccauaccuUGUGGCg -3'
miRNA:   3'- cCGCGGCGuUGGCUa---CAGCu-----------AUAUCG- -5'
17087 5' -51.3 NC_004333.2 + 31621 0.66 0.893821
Target:  5'- cGGCcgcugugGCCGCGcgcgugaacagucgGCCGAucUGcUCGAUcgGGCc -3'
miRNA:   3'- -CCG-------CGGCGU--------------UGGCU--AC-AGCUAuaUCG- -5'
17087 5' -51.3 NC_004333.2 + 4313 0.66 0.888618
Target:  5'- uGCGCgGCAuccucacGCCGAUGUUcucg-AGCg -3'
miRNA:   3'- cCGCGgCGU-------UGGCUACAGcuauaUCG- -5'
17087 5' -51.3 NC_004333.2 + 28665 0.66 0.884819
Target:  5'- -cUGUCGCAGCCGAgcgacccgcgauacaUGaUCGAcugAUGGCg -3'
miRNA:   3'- ccGCGGCGUUGGCU---------------AC-AGCUa--UAUCG- -5'
17087 5' -51.3 NC_004333.2 + 3758 0.66 0.873818
Target:  5'- aGGUGCCGU-ACagc-GUCGAcGUGGCg -3'
miRNA:   3'- -CCGCGGCGuUGgcuaCAGCUaUAUCG- -5'
17087 5' -51.3 NC_004333.2 + 25537 0.66 0.873818
Target:  5'- cGCGCCGC--UCGAggucagcggGUCGAcauUGGCg -3'
miRNA:   3'- cCGCGGCGuuGGCUa--------CAGCUau-AUCG- -5'
17087 5' -51.3 NC_004333.2 + 18871 0.66 0.873818
Target:  5'- cGCGCCcuGCGGCCGcg--CGAUA-AGCg -3'
miRNA:   3'- cCGCGG--CGUUGGCuacaGCUAUaUCG- -5'
17087 5' -51.3 NC_004333.2 + 18551 0.67 0.865642
Target:  5'- gGGUGCgGCAGCCGgcG-CGGc--GGCg -3'
miRNA:   3'- -CCGCGgCGUUGGCuaCaGCUauaUCG- -5'
17087 5' -51.3 NC_004333.2 + 11632 0.67 0.865642
Target:  5'- cGCG-CGCGAaCG-UGUCGAaGUAGCg -3'
miRNA:   3'- cCGCgGCGUUgGCuACAGCUaUAUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.