miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17088 3' -53.6 NC_004333.2 + 9487 0.66 0.786369
Target:  5'- cGUGCGCagccCGcaggGCAGCGaagacgacgaaaUGCCGGGCGc -3'
miRNA:   3'- -CGCGUGaa--GCa---UGUCGC------------ACGGUUCGC- -5'
17088 3' -53.6 NC_004333.2 + 28582 0.66 0.786369
Target:  5'- cGCGCACUcccgaaaguucUCaccuuGUACuugcGCGUGCCGcguuGCGa -3'
miRNA:   3'- -CGCGUGA-----------AG-----CAUGu---CGCACGGUu---CGC- -5'
17088 3' -53.6 NC_004333.2 + 37543 0.66 0.786369
Target:  5'- gGUGCGCUgcUCGUGCgucAGCucGCCGAcGCGu -3'
miRNA:   3'- -CGCGUGA--AGCAUG---UCGcaCGGUU-CGC- -5'
17088 3' -53.6 NC_004333.2 + 15366 0.66 0.78536
Target:  5'- cGCGCGCUgaacgccgaaugcUUGUAacguGGCcgGUGCaCAAGCGa -3'
miRNA:   3'- -CGCGUGA-------------AGCAUg---UCG--CACG-GUUCGC- -5'
17088 3' -53.6 NC_004333.2 + 18891 0.66 0.776197
Target:  5'- cGCGgGCUUCGauaGCAGCacgcGCCcuGCGg -3'
miRNA:   3'- -CGCgUGAAGCa--UGUCGca--CGGuuCGC- -5'
17088 3' -53.6 NC_004333.2 + 38001 0.66 0.773114
Target:  5'- cGUGCACUUCccacgacgcaggcaGUuuGGCGUcGCCGagAGCGc -3'
miRNA:   3'- -CGCGUGAAG--------------CAugUCGCA-CGGU--UCGC- -5'
17088 3' -53.6 NC_004333.2 + 10748 0.66 0.765869
Target:  5'- gGCGUA--UCGUACcGCGcgGCCcGGCGc -3'
miRNA:   3'- -CGCGUgaAGCAUGuCGCa-CGGuUCGC- -5'
17088 3' -53.6 NC_004333.2 + 35724 0.66 0.765869
Target:  5'- -gGCACaauaaCGgcauccgGCGGCGUGCCAuAGCa -3'
miRNA:   3'- cgCGUGaa---GCa------UGUCGCACGGU-UCGc -5'
17088 3' -53.6 NC_004333.2 + 21845 0.66 0.755396
Target:  5'- cGCgGCACUUCGccgaAUGGCuUGUCGAGCu -3'
miRNA:   3'- -CG-CGUGAAGCa---UGUCGcACGGUUCGc -5'
17088 3' -53.6 NC_004333.2 + 17020 0.66 0.755396
Target:  5'- cCGCGCUcgacUCGUGCAcGCugcagGCCAauGGCGu -3'
miRNA:   3'- cGCGUGA----AGCAUGU-CGca---CGGU--UCGC- -5'
17088 3' -53.6 NC_004333.2 + 47767 0.66 0.755396
Target:  5'- aGCGUgaacGCUucgUCGUACuucGCcuUGCCGAGCGc -3'
miRNA:   3'- -CGCG----UGA---AGCAUGu--CGc-ACGGUUCGC- -5'
17088 3' -53.6 NC_004333.2 + 32604 0.66 0.744792
Target:  5'- uGCGCGCcgCGUAUucGCGUGC--GGCu -3'
miRNA:   3'- -CGCGUGaaGCAUGu-CGCACGguUCGc -5'
17088 3' -53.6 NC_004333.2 + 11102 0.66 0.735146
Target:  5'- cGUGCGCgaCGaACAGCGgcacgaaaucgccucGCCGGGCa -3'
miRNA:   3'- -CGCGUGaaGCaUGUCGCa--------------CGGUUCGc -5'
17088 3' -53.6 NC_004333.2 + 39680 0.66 0.734069
Target:  5'- gGCGCGCUUCcugguCGGCcUGCCu-GCGc -3'
miRNA:   3'- -CGCGUGAAGcau--GUCGcACGGuuCGC- -5'
17088 3' -53.6 NC_004333.2 + 14819 0.66 0.734069
Target:  5'- cGCGCGCgagcaggucaUUCGcagaccACGGCGUGCCGAuCa -3'
miRNA:   3'- -CGCGUG----------AAGCa-----UGUCGCACGGUUcGc -5'
17088 3' -53.6 NC_004333.2 + 29870 0.66 0.734069
Target:  5'- cGCGCGCgguagUCGU-CGGCGaagcGCUgcGCGa -3'
miRNA:   3'- -CGCGUGa----AGCAuGUCGCa---CGGuuCGC- -5'
17088 3' -53.6 NC_004333.2 + 29258 0.66 0.734069
Target:  5'- uGCGCgGgUUCGUGCAGCG-GCCcgaccAGUc -3'
miRNA:   3'- -CGCG-UgAAGCAUGUCGCaCGGu----UCGc -5'
17088 3' -53.6 NC_004333.2 + 29367 0.67 0.723238
Target:  5'- cGCGCACUUCaaGCGGCucGUcGCCcgcgAAGCa -3'
miRNA:   3'- -CGCGUGAAGcaUGUCG--CA-CGG----UUCGc -5'
17088 3' -53.6 NC_004333.2 + 39044 0.67 0.723238
Target:  5'- aCGCGCUUCGUugAGcCGgacGgCGAGUa -3'
miRNA:   3'- cGCGUGAAGCAugUC-GCa--CgGUUCGc -5'
17088 3' -53.6 NC_004333.2 + 21028 0.67 0.723238
Target:  5'- cGCGCGCguuugCGUccgGCcccguGGCGUagccGCCGGGCGu -3'
miRNA:   3'- -CGCGUGaa---GCA---UG-----UCGCA----CGGUUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.