Results 1 - 20 of 78 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17088 | 3' | -53.6 | NC_004333.2 | + | 9487 | 0.66 | 0.786369 |
Target: 5'- cGUGCGCagccCGcaggGCAGCGaagacgacgaaaUGCCGGGCGc -3' miRNA: 3'- -CGCGUGaa--GCa---UGUCGC------------ACGGUUCGC- -5' |
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17088 | 3' | -53.6 | NC_004333.2 | + | 39680 | 0.66 | 0.734069 |
Target: 5'- gGCGCGCUUCcugguCGGCcUGCCu-GCGc -3' miRNA: 3'- -CGCGUGAAGcau--GUCGcACGGuuCGC- -5' |
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17088 | 3' | -53.6 | NC_004333.2 | + | 15366 | 0.66 | 0.78536 |
Target: 5'- cGCGCGCUgaacgccgaaugcUUGUAacguGGCcgGUGCaCAAGCGa -3' miRNA: 3'- -CGCGUGA-------------AGCAUg---UCG--CACG-GUUCGC- -5' |
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17088 | 3' | -53.6 | NC_004333.2 | + | 11102 | 0.66 | 0.735146 |
Target: 5'- cGUGCGCgaCGaACAGCGgcacgaaaucgccucGCCGGGCa -3' miRNA: 3'- -CGCGUGaaGCaUGUCGCa--------------CGGUUCGc -5' |
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17088 | 3' | -53.6 | NC_004333.2 | + | 10748 | 0.66 | 0.765869 |
Target: 5'- gGCGUA--UCGUACcGCGcgGCCcGGCGc -3' miRNA: 3'- -CGCGUgaAGCAUGuCGCa-CGGuUCGC- -5' |
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17088 | 3' | -53.6 | NC_004333.2 | + | 14819 | 0.66 | 0.734069 |
Target: 5'- cGCGCGCgagcaggucaUUCGcagaccACGGCGUGCCGAuCa -3' miRNA: 3'- -CGCGUG----------AAGCa-----UGUCGCACGGUUcGc -5' |
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17088 | 3' | -53.6 | NC_004333.2 | + | 37543 | 0.66 | 0.786369 |
Target: 5'- gGUGCGCUgcUCGUGCgucAGCucGCCGAcGCGu -3' miRNA: 3'- -CGCGUGA--AGCAUG---UCGcaCGGUU-CGC- -5' |
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17088 | 3' | -53.6 | NC_004333.2 | + | 35724 | 0.66 | 0.765869 |
Target: 5'- -gGCACaauaaCGgcauccgGCGGCGUGCCAuAGCa -3' miRNA: 3'- cgCGUGaa---GCa------UGUCGCACGGU-UCGc -5' |
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17088 | 3' | -53.6 | NC_004333.2 | + | 17020 | 0.66 | 0.755396 |
Target: 5'- cCGCGCUcgacUCGUGCAcGCugcagGCCAauGGCGu -3' miRNA: 3'- cGCGUGA----AGCAUGU-CGca---CGGU--UCGC- -5' |
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17088 | 3' | -53.6 | NC_004333.2 | + | 32604 | 0.66 | 0.744792 |
Target: 5'- uGCGCGCcgCGUAUucGCGUGC--GGCu -3' miRNA: 3'- -CGCGUGaaGCAUGu-CGCACGguUCGc -5' |
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17088 | 3' | -53.6 | NC_004333.2 | + | 28582 | 0.66 | 0.786369 |
Target: 5'- cGCGCACUcccgaaaguucUCaccuuGUACuugcGCGUGCCGcguuGCGa -3' miRNA: 3'- -CGCGUGA-----------AG-----CAUGu---CGCACGGUu---CGC- -5' |
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17088 | 3' | -53.6 | NC_004333.2 | + | 18891 | 0.66 | 0.776197 |
Target: 5'- cGCGgGCUUCGauaGCAGCacgcGCCcuGCGg -3' miRNA: 3'- -CGCgUGAAGCa--UGUCGca--CGGuuCGC- -5' |
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17088 | 3' | -53.6 | NC_004333.2 | + | 38001 | 0.66 | 0.773114 |
Target: 5'- cGUGCACUUCccacgacgcaggcaGUuuGGCGUcGCCGagAGCGc -3' miRNA: 3'- -CGCGUGAAG--------------CAugUCGCA-CGGU--UCGC- -5' |
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17088 | 3' | -53.6 | NC_004333.2 | + | 21845 | 0.66 | 0.755396 |
Target: 5'- cGCgGCACUUCGccgaAUGGCuUGUCGAGCu -3' miRNA: 3'- -CG-CGUGAAGCa---UGUCGcACGGUUCGc -5' |
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17088 | 3' | -53.6 | NC_004333.2 | + | 47767 | 0.66 | 0.755396 |
Target: 5'- aGCGUgaacGCUucgUCGUACuucGCcuUGCCGAGCGc -3' miRNA: 3'- -CGCG----UGA---AGCAUGu--CGc-ACGGUUCGC- -5' |
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17088 | 3' | -53.6 | NC_004333.2 | + | 29258 | 0.66 | 0.734069 |
Target: 5'- uGCGCgGgUUCGUGCAGCG-GCCcgaccAGUc -3' miRNA: 3'- -CGCG-UgAAGCAUGUCGCaCGGu----UCGc -5' |
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17088 | 3' | -53.6 | NC_004333.2 | + | 29870 | 0.66 | 0.734069 |
Target: 5'- cGCGCGCgguagUCGU-CGGCGaagcGCUgcGCGa -3' miRNA: 3'- -CGCGUGa----AGCAuGUCGCa---CGGuuCGC- -5' |
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17088 | 3' | -53.6 | NC_004333.2 | + | 25662 | 0.67 | 0.701305 |
Target: 5'- -gGCAUUuaUCGUcGCuGCGUGgCAGGCGc -3' miRNA: 3'- cgCGUGA--AGCA-UGuCGCACgGUUCGC- -5' |
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17088 | 3' | -53.6 | NC_004333.2 | + | 37304 | 0.67 | 0.701305 |
Target: 5'- gGUGaaaGCUUCGUugGuGCGgGCCAcAGCGu -3' miRNA: 3'- -CGCg--UGAAGCAugU-CGCaCGGU-UCGC- -5' |
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17088 | 3' | -53.6 | NC_004333.2 | + | 25187 | 0.67 | 0.701305 |
Target: 5'- uGCGCGCcgcCGUGCucgcCGUGCCcgGAGUGa -3' miRNA: 3'- -CGCGUGaa-GCAUGuc--GCACGG--UUCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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