miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17088 3' -53.6 NC_004333.2 + 40280 1.01 0.004885
Target:  5'- cGCGCACUUCGUACAGC-UGCCAAGCGg -3'
miRNA:   3'- -CGCGUGAAGCAUGUCGcACGGUUCGC- -5'
17088 3' -53.6 NC_004333.2 + 25084 0.79 0.165743
Target:  5'- gGCGCACUcCGUGgcgauCAGCGUGaCAGGCGg -3'
miRNA:   3'- -CGCGUGAaGCAU-----GUCGCACgGUUCGC- -5'
17088 3' -53.6 NC_004333.2 + 25410 0.78 0.175231
Target:  5'- aGCGCGCc---UGCAGCGUGCCGgcGGCGg -3'
miRNA:   3'- -CGCGUGaagcAUGUCGCACGGU--UCGC- -5'
17088 3' -53.6 NC_004333.2 + 15471 0.78 0.185199
Target:  5'- gGCGCGCUU-----GGCGUGCCGAGCGc -3'
miRNA:   3'- -CGCGUGAAgcaugUCGCACGGUUCGC- -5'
17088 3' -53.6 NC_004333.2 + 14669 0.77 0.218148
Target:  5'- gGCGCAUUUCGcGCAGCuugucgGCCGAGUGc -3'
miRNA:   3'- -CGCGUGAAGCaUGUCGca----CGGUUCGC- -5'
17088 3' -53.6 NC_004333.2 + 37254 0.76 0.249322
Target:  5'- gGCGCGCgUCGUgaGCGGCGUGUCGccGCGc -3'
miRNA:   3'- -CGCGUGaAGCA--UGUCGCACGGUu-CGC- -5'
17088 3' -53.6 NC_004333.2 + 26802 0.74 0.306723
Target:  5'- gGCGCGCUUCGUugccgACGGCccgGCCugcAGCGu -3'
miRNA:   3'- -CGCGUGAAGCA-----UGUCGca-CGGu--UCGC- -5'
17088 3' -53.6 NC_004333.2 + 31241 0.74 0.330717
Target:  5'- gGCGCGCcgUCuggGCGGCGaUGCCAAGgCGg -3'
miRNA:   3'- -CGCGUGa-AGca-UGUCGC-ACGGUUC-GC- -5'
17088 3' -53.6 NC_004333.2 + 25874 0.73 0.373708
Target:  5'- aGCaGCGCUUgGUGC-GCGagcGCCAAGCGc -3'
miRNA:   3'- -CG-CGUGAAgCAUGuCGCa--CGGUUCGC- -5'
17088 3' -53.6 NC_004333.2 + 3081 0.73 0.373708
Target:  5'- cGCGCGCUaCGUcGCGGCGgacgcGCCGgcgAGCGu -3'
miRNA:   3'- -CGCGUGAaGCA-UGUCGCa----CGGU---UCGC- -5'
17088 3' -53.6 NC_004333.2 + 37214 0.72 0.420336
Target:  5'- cCGCACgugaucgcgUCGUGCGGCGUGagcgcuUCGAGCa -3'
miRNA:   3'- cGCGUGa--------AGCAUGUCGCAC------GGUUCGc -5'
17088 3' -53.6 NC_004333.2 + 6918 0.72 0.420336
Target:  5'- uGCGCACgUUUGa--GGCGUGCgCGGGCGc -3'
miRNA:   3'- -CGCGUG-AAGCaugUCGCACG-GUUCGC- -5'
17088 3' -53.6 NC_004333.2 + 46870 0.72 0.436972
Target:  5'- uGCGCACg--GUAUAGacggcacgcuuggaCGUGCCGAGCa -3'
miRNA:   3'- -CGCGUGaagCAUGUC--------------GCACGGUUCGc -5'
17088 3' -53.6 NC_004333.2 + 24286 0.71 0.470311
Target:  5'- -aGCGCcgUUuUACGGCG-GCCAGGCGg -3'
miRNA:   3'- cgCGUGa-AGcAUGUCGCaCGGUUCGC- -5'
17088 3' -53.6 NC_004333.2 + 47801 0.71 0.470311
Target:  5'- uCGCagGCUgaUCGUGCAGCGcGCCGccuGCGg -3'
miRNA:   3'- cGCG--UGA--AGCAUGUCGCaCGGUu--CGC- -5'
17088 3' -53.6 NC_004333.2 + 44227 0.71 0.491135
Target:  5'- gGCGCGCgUCGUcggaucgucgagAUAGCG-GCCGAGUc -3'
miRNA:   3'- -CGCGUGaAGCA------------UGUCGCaCGGUUCGc -5'
17088 3' -53.6 NC_004333.2 + 47732 0.71 0.491135
Target:  5'- cGCGCGCcguggccUCGUACaccccGGCcgacuGUGCCAAGCa -3'
miRNA:   3'- -CGCGUGa------AGCAUG-----UCG-----CACGGUUCGc -5'
17088 3' -53.6 NC_004333.2 + 9001 0.71 0.491135
Target:  5'- cCGaCGCggCGUucGCGGCuUGCCAGGCGg -3'
miRNA:   3'- cGC-GUGaaGCA--UGUCGcACGGUUCGC- -5'
17088 3' -53.6 NC_004333.2 + 13632 0.71 0.495351
Target:  5'- -aGCACUUCGUGCAucGCGcgguacucgggcagcUGCgCGAGCa -3'
miRNA:   3'- cgCGUGAAGCAUGU--CGC---------------ACG-GUUCGc -5'
17088 3' -53.6 NC_004333.2 + 26429 0.7 0.501707
Target:  5'- gGCGuCAUggucaaUUGUGCGGCGUGCCGaccuGGCc -3'
miRNA:   3'- -CGC-GUGa-----AGCAUGUCGCACGGU----UCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.