miRNA display CGI


Results 21 - 40 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17088 3' -53.6 NC_004333.2 + 4912 0.67 0.716694
Target:  5'- gGCGCGCg-CGUACGGUcaGCCGacuauccagauuccgGGCGg -3'
miRNA:   3'- -CGCGUGaaGCAUGUCGcaCGGU---------------UCGC- -5'
17088 3' -53.6 NC_004333.2 + 28183 0.67 0.712313
Target:  5'- cGCGCGCgUUGagauuuuCGGCGUGCCGcuCGa -3'
miRNA:   3'- -CGCGUGaAGCau-----GUCGCACGGUucGC- -5'
17088 3' -53.6 NC_004333.2 + 33451 0.67 0.712313
Target:  5'- gGCaGCAUUg---GCAGCGgcgcGCCGGGCGa -3'
miRNA:   3'- -CG-CGUGAagcaUGUCGCa---CGGUUCGC- -5'
17088 3' -53.6 NC_004333.2 + 44960 0.67 0.712313
Target:  5'- uGCGCGCgcaCGU-CGGCG-GCCGAcuGCa -3'
miRNA:   3'- -CGCGUGaa-GCAuGUCGCaCGGUU--CGc -5'
17088 3' -53.6 NC_004333.2 + 21775 0.67 0.712313
Target:  5'- gGCGCACgugCGcaUAgAGCGcGUCGAGCu -3'
miRNA:   3'- -CGCGUGaa-GC--AUgUCGCaCGGUUCGc -5'
17088 3' -53.6 NC_004333.2 + 14594 0.67 0.707919
Target:  5'- cGUGCGCgugaucaugUCGUGCGauGCGacguucaaggacgGCCAGGCGu -3'
miRNA:   3'- -CGCGUGa--------AGCAUGU--CGCa------------CGGUUCGC- -5'
17088 3' -53.6 NC_004333.2 + 47958 0.67 0.701305
Target:  5'- gGCGCGCUggUCGUcggcgucaucgGCGGUGUGC--GGCu -3'
miRNA:   3'- -CGCGUGA--AGCA-----------UGUCGCACGguUCGc -5'
17088 3' -53.6 NC_004333.2 + 13353 0.67 0.701305
Target:  5'- -gGCACggUGUACgGGCGcgGCaCGAGCGg -3'
miRNA:   3'- cgCGUGaaGCAUG-UCGCa-CG-GUUCGC- -5'
17088 3' -53.6 NC_004333.2 + 13766 0.67 0.701305
Target:  5'- cGCGCGCcgcUCGcGCGGCGUGUaguuGCu -3'
miRNA:   3'- -CGCGUGa--AGCaUGUCGCACGguu-CGc -5'
17088 3' -53.6 NC_004333.2 + 38331 0.67 0.701305
Target:  5'- aUGCGCcUCG-AgGGCGUGCCGAcCGa -3'
miRNA:   3'- cGCGUGaAGCaUgUCGCACGGUUcGC- -5'
17088 3' -53.6 NC_004333.2 + 15962 0.67 0.701305
Target:  5'- uGCGCACUUCa-GCAGguCG-GCCAGGUu -3'
miRNA:   3'- -CGCGUGAAGcaUGUC--GCaCGGUUCGc -5'
17088 3' -53.6 NC_004333.2 + 25187 0.67 0.701305
Target:  5'- uGCGCGCcgcCGUGCucgcCGUGCCcgGAGUGa -3'
miRNA:   3'- -CGCGUGaa-GCAUGuc--GCACGG--UUCGC- -5'
17088 3' -53.6 NC_004333.2 + 25662 0.67 0.701305
Target:  5'- -gGCAUUuaUCGUcGCuGCGUGgCAGGCGc -3'
miRNA:   3'- cgCGUGA--AGCA-UGuCGCACgGUUCGC- -5'
17088 3' -53.6 NC_004333.2 + 37304 0.67 0.701305
Target:  5'- gGUGaaaGCUUCGUugGuGCGgGCCAcAGCGu -3'
miRNA:   3'- -CGCg--UGAAGCAugU-CGCaCGGU-UCGC- -5'
17088 3' -53.6 NC_004333.2 + 4260 0.67 0.700201
Target:  5'- cGCGCACgUUCGUGCgcccGGUcgacacgaacaucGUGCCcGGCu -3'
miRNA:   3'- -CGCGUG-AAGCAUG----UCG-------------CACGGuUCGc -5'
17088 3' -53.6 NC_004333.2 + 2420 0.67 0.690227
Target:  5'- cCGUACagCG-GCAGCGUGCCuugguacGGCGc -3'
miRNA:   3'- cGCGUGaaGCaUGUCGCACGGu------UCGC- -5'
17088 3' -53.6 NC_004333.2 + 781 0.67 0.690227
Target:  5'- uGCaGCcCUUCGaccUugAGCGUGCCGgucgccGGCGc -3'
miRNA:   3'- -CG-CGuGAAGC---AugUCGCACGGU------UCGC- -5'
17088 3' -53.6 NC_004333.2 + 18387 0.67 0.679091
Target:  5'- gGCGUGaggaUCGUGCGcacgcGCGUGCC-GGCGa -3'
miRNA:   3'- -CGCGUga--AGCAUGU-----CGCACGGuUCGC- -5'
17088 3' -53.6 NC_004333.2 + 21092 0.68 0.667908
Target:  5'- uGCGCggccACUUCGUcgcccgugACGGC-UGCCAcGCGc -3'
miRNA:   3'- -CGCG----UGAAGCA--------UGUCGcACGGUuCGC- -5'
17088 3' -53.6 NC_004333.2 + 28080 0.68 0.667908
Target:  5'- uGCGCGCgaucUgGUuCAuCGUGUCGAGCGg -3'
miRNA:   3'- -CGCGUGa---AgCAuGUcGCACGGUUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.