miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17088 3' -53.6 NC_004333.2 + 253 0.69 0.589256
Target:  5'- gGCGCACgg---GCAGUGgacucgcGCCAGGCGc -3'
miRNA:   3'- -CGCGUGaagcaUGUCGCa------CGGUUCGC- -5'
17088 3' -53.6 NC_004333.2 + 364 0.68 0.664545
Target:  5'- -gGCGCUUUGaACAGCuGcaggccgacagaguUGCCGAGCGc -3'
miRNA:   3'- cgCGUGAAGCaUGUCG-C--------------ACGGUUCGC- -5'
17088 3' -53.6 NC_004333.2 + 781 0.67 0.690227
Target:  5'- uGCaGCcCUUCGaccUugAGCGUGCCGgucgccGGCGc -3'
miRNA:   3'- -CG-CGuGAAGC---AugUCGCACGGU------UCGC- -5'
17088 3' -53.6 NC_004333.2 + 2420 0.67 0.690227
Target:  5'- cCGUACagCG-GCAGCGUGCCuugguacGGCGc -3'
miRNA:   3'- cGCGUGaaGCaUGUCGCACGGu------UCGC- -5'
17088 3' -53.6 NC_004333.2 + 2617 0.69 0.555912
Target:  5'- uCGCAUUcgcgUCGUggaACAGCG-GUCAGGCGu -3'
miRNA:   3'- cGCGUGA----AGCA---UGUCGCaCGGUUCGC- -5'
17088 3' -53.6 NC_004333.2 + 3081 0.73 0.373708
Target:  5'- cGCGCGCUaCGUcGCGGCGgacgcGCCGgcgAGCGu -3'
miRNA:   3'- -CGCGUGAaGCA-UGUCGCa----CGGU---UCGC- -5'
17088 3' -53.6 NC_004333.2 + 4260 0.67 0.700201
Target:  5'- cGCGCACgUUCGUGCgcccGGUcgacacgaacaucGUGCCcGGCu -3'
miRNA:   3'- -CGCGUG-AAGCAUG----UCG-------------CACGGuUCGc -5'
17088 3' -53.6 NC_004333.2 + 4912 0.67 0.716694
Target:  5'- gGCGCGCg-CGUACGGUcaGCCGacuauccagauuccgGGCGg -3'
miRNA:   3'- -CGCGUGaaGCAUGUCGcaCGGU---------------UCGC- -5'
17088 3' -53.6 NC_004333.2 + 5025 0.69 0.600457
Target:  5'- uCGCGCUUg--ACAgGCG-GCCAGGCGg -3'
miRNA:   3'- cGCGUGAAgcaUGU-CGCaCGGUUCGC- -5'
17088 3' -53.6 NC_004333.2 + 6719 0.68 0.622935
Target:  5'- aGCGCGC--CGaGC-GCGcUGCCGAGCGc -3'
miRNA:   3'- -CGCGUGaaGCaUGuCGC-ACGGUUCGC- -5'
17088 3' -53.6 NC_004333.2 + 6918 0.72 0.420336
Target:  5'- uGCGCACgUUUGa--GGCGUGCgCGGGCGc -3'
miRNA:   3'- -CGCGUG-AAGCaugUCGCACG-GUUCGC- -5'
17088 3' -53.6 NC_004333.2 + 9001 0.71 0.491135
Target:  5'- cCGaCGCggCGUucGCGGCuUGCCAGGCGg -3'
miRNA:   3'- cGC-GUGaaGCA--UGUCGcACGGUUCGC- -5'
17088 3' -53.6 NC_004333.2 + 9173 0.69 0.555912
Target:  5'- uGCGCGCUUgCGUucguucgcgACGGCaGUGUCGAucGCGg -3'
miRNA:   3'- -CGCGUGAA-GCA---------UGUCG-CACGGUU--CGC- -5'
17088 3' -53.6 NC_004333.2 + 9487 0.66 0.786369
Target:  5'- cGUGCGCagccCGcaggGCAGCGaagacgacgaaaUGCCGGGCGc -3'
miRNA:   3'- -CGCGUGaa--GCa---UGUCGC------------ACGGUUCGC- -5'
17088 3' -53.6 NC_004333.2 + 10748 0.66 0.765869
Target:  5'- gGCGUA--UCGUACcGCGcgGCCcGGCGc -3'
miRNA:   3'- -CGCGUgaAGCAUGuCGCa-CGGuUCGC- -5'
17088 3' -53.6 NC_004333.2 + 11102 0.66 0.735146
Target:  5'- cGUGCGCgaCGaACAGCGgcacgaaaucgccucGCCGGGCa -3'
miRNA:   3'- -CGCGUGaaGCaUGUCGCa--------------CGGUUCGc -5'
17088 3' -53.6 NC_004333.2 + 13353 0.67 0.701305
Target:  5'- -gGCACggUGUACgGGCGcgGCaCGAGCGg -3'
miRNA:   3'- cgCGUGaaGCAUG-UCGCa-CG-GUUCGC- -5'
17088 3' -53.6 NC_004333.2 + 13632 0.71 0.495351
Target:  5'- -aGCACUUCGUGCAucGCGcgguacucgggcagcUGCgCGAGCa -3'
miRNA:   3'- cgCGUGAAGCAUGU--CGC---------------ACG-GUUCGc -5'
17088 3' -53.6 NC_004333.2 + 13766 0.67 0.701305
Target:  5'- cGCGCGCcgcUCGcGCGGCGUGUaguuGCu -3'
miRNA:   3'- -CGCGUGa--AGCaUGUCGCACGguu-CGc -5'
17088 3' -53.6 NC_004333.2 + 14594 0.67 0.707919
Target:  5'- cGUGCGCgugaucaugUCGUGCGauGCGacguucaaggacgGCCAGGCGu -3'
miRNA:   3'- -CGCGUGa--------AGCAUGU--CGCa------------CGGUUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.