miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17088 3' -53.6 NC_004333.2 + 25410 0.78 0.175231
Target:  5'- aGCGCGCc---UGCAGCGUGCCGgcGGCGg -3'
miRNA:   3'- -CGCGUGaagcAUGUCGCACGGU--UCGC- -5'
17088 3' -53.6 NC_004333.2 + 364 0.68 0.664545
Target:  5'- -gGCGCUUUGaACAGCuGcaggccgacagaguUGCCGAGCGc -3'
miRNA:   3'- cgCGUGAAGCaUGUCG-C--------------ACGGUUCGC- -5'
17088 3' -53.6 NC_004333.2 + 781 0.67 0.690227
Target:  5'- uGCaGCcCUUCGaccUugAGCGUGCCGgucgccGGCGc -3'
miRNA:   3'- -CG-CGuGAAGC---AugUCGCACGGU------UCGC- -5'
17088 3' -53.6 NC_004333.2 + 37543 0.66 0.786369
Target:  5'- gGUGCGCUgcUCGUGCgucAGCucGCCGAcGCGu -3'
miRNA:   3'- -CGCGUGA--AGCAUG---UCGcaCGGUU-CGC- -5'
17088 3' -53.6 NC_004333.2 + 25874 0.73 0.373708
Target:  5'- aGCaGCGCUUgGUGC-GCGagcGCCAAGCGc -3'
miRNA:   3'- -CG-CGUGAAgCAUGuCGCa--CGGUUCGC- -5'
17088 3' -53.6 NC_004333.2 + 6918 0.72 0.420336
Target:  5'- uGCGCACgUUUGa--GGCGUGCgCGGGCGc -3'
miRNA:   3'- -CGCGUG-AAGCaugUCGCACG-GUUCGC- -5'
17088 3' -53.6 NC_004333.2 + 9001 0.71 0.491135
Target:  5'- cCGaCGCggCGUucGCGGCuUGCCAGGCGg -3'
miRNA:   3'- cGC-GUGaaGCA--UGUCGcACGGUUCGC- -5'
17088 3' -53.6 NC_004333.2 + 47732 0.71 0.491135
Target:  5'- cGCGCGCcguggccUCGUACaccccGGCcgacuGUGCCAAGCa -3'
miRNA:   3'- -CGCGUGa------AGCAUG-----UCG-----CACGGUUCGc -5'
17088 3' -53.6 NC_004333.2 + 9173 0.69 0.555912
Target:  5'- uGCGCGCUUgCGUucguucgcgACGGCaGUGUCGAucGCGg -3'
miRNA:   3'- -CGCGUGAA-GCA---------UGUCG-CACGGUU--CGC- -5'
17088 3' -53.6 NC_004333.2 + 29933 0.68 0.656689
Target:  5'- uUGCcaugGCUUCGaaaaUGCGcgaaaagcGCGUGCCGAGCGc -3'
miRNA:   3'- cGCG----UGAAGC----AUGU--------CGCACGGUUCGC- -5'
17088 3' -53.6 NC_004333.2 + 28128 0.69 0.578092
Target:  5'- cGCGCGCguuucCGUACuGCGcGCCGccgagguugacAGCGa -3'
miRNA:   3'- -CGCGUGaa---GCAUGuCGCaCGGU-----------UCGC- -5'
17088 3' -53.6 NC_004333.2 + 26429 0.7 0.501707
Target:  5'- gGCGuCAUggucaaUUGUGCGGCGUGCCGaccuGGCc -3'
miRNA:   3'- -CGC-GUGa-----AGCAUGUCGCACGGU----UCGc -5'
17088 3' -53.6 NC_004333.2 + 15471 0.78 0.185199
Target:  5'- gGCGCGCUU-----GGCGUGCCGAGCGc -3'
miRNA:   3'- -CGCGUGAAgcaugUCGCACGGUUCGC- -5'
17088 3' -53.6 NC_004333.2 + 5025 0.69 0.600457
Target:  5'- uCGCGCUUg--ACAgGCG-GCCAGGCGg -3'
miRNA:   3'- cGCGUGAAgcaUGU-CGCaCGGUUCGC- -5'
17088 3' -53.6 NC_004333.2 + 14669 0.77 0.218148
Target:  5'- gGCGCAUUUCGcGCAGCuugucgGCCGAGUGc -3'
miRNA:   3'- -CGCGUGAAGCaUGUCGca----CGGUUCGC- -5'
17088 3' -53.6 NC_004333.2 + 13632 0.71 0.495351
Target:  5'- -aGCACUUCGUGCAucGCGcgguacucgggcagcUGCgCGAGCa -3'
miRNA:   3'- cgCGUGAAGCAUGU--CGC---------------ACG-GUUCGc -5'
17088 3' -53.6 NC_004333.2 + 41616 0.68 0.656689
Target:  5'- aCGCGCUcgcUCGUGCucuGGCGgcagauUGUCGGGCGc -3'
miRNA:   3'- cGCGUGA---AGCAUG---UCGC------ACGGUUCGC- -5'
17088 3' -53.6 NC_004333.2 + 28080 0.68 0.667908
Target:  5'- uGCGCGCgaucUgGUuCAuCGUGUCGAGCGg -3'
miRNA:   3'- -CGCGUGa---AgCAuGUcGCACGGUUCGC- -5'
17088 3' -53.6 NC_004333.2 + 26802 0.74 0.306723
Target:  5'- gGCGCGCUUCGUugccgACGGCccgGCCugcAGCGu -3'
miRNA:   3'- -CGCGUGAAGCA-----UGUCGca-CGGu--UCGC- -5'
17088 3' -53.6 NC_004333.2 + 47801 0.71 0.470311
Target:  5'- uCGCagGCUgaUCGUGCAGCGcGCCGccuGCGg -3'
miRNA:   3'- cGCG--UGA--AGCAUGUCGCaCGGUu--CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.