miRNA display CGI


Results 61 - 80 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17089 5' -53.6 NC_004333.2 + 32151 0.68 0.675557
Target:  5'- -aCGcGGCG-ACuGUCGGCAGGCCGgccaCGCg -3'
miRNA:   3'- uaGC-CCGCaUG-UAGCUGUUUGGC----GCG- -5'
17089 5' -53.6 NC_004333.2 + 17162 0.68 0.675557
Target:  5'- aGUCGuGC--GCGUCGACAAgGCCGCuGCg -3'
miRNA:   3'- -UAGCcCGcaUGUAGCUGUU-UGGCG-CG- -5'
17089 5' -53.6 NC_004333.2 + 24135 0.68 0.653199
Target:  5'- gAUCGGGgcaaGUGCuauGUCGGCuacgacAUCGCGCa -3'
miRNA:   3'- -UAGCCCg---CAUG---UAGCUGuu----UGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 14183 0.68 0.652078
Target:  5'- -aCGGGCcacgacgauaGCGUCGACGgcaugacGAUCGCGCu -3'
miRNA:   3'- uaGCCCGca--------UGUAGCUGU-------UUGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 14409 0.68 0.640862
Target:  5'- uGUCGcGCGUcuACAUCGAaGAggcggcgaacgguGCCGCGCu -3'
miRNA:   3'- -UAGCcCGCA--UGUAGCUgUU-------------UGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 11320 0.68 0.638617
Target:  5'- cAUUGGGcCGUcuggcagcacucgaGCGcCGGCAAggaGCCGCGCc -3'
miRNA:   3'- -UAGCCC-GCA--------------UGUaGCUGUU---UGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 11669 0.68 0.63076
Target:  5'- -cCGGcGCGUuucaggauuuguACGUCGACAAucaGCGCa -3'
miRNA:   3'- uaGCC-CGCA------------UGUAGCUGUUuggCGCG- -5'
17089 5' -53.6 NC_004333.2 + 17374 0.68 0.63076
Target:  5'- cUCGGGC--AUGUCGAgGAcGCUGCGCc -3'
miRNA:   3'- uAGCCCGcaUGUAGCUgUU-UGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 29184 0.68 0.641984
Target:  5'- gGUCGGGCcgcUGCA-CGAac--CCGCGCa -3'
miRNA:   3'- -UAGCCCGc--AUGUaGCUguuuGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 13907 0.68 0.653199
Target:  5'- -aCGcGGCGccCGUCGuCGAACCGuCGCc -3'
miRNA:   3'- uaGC-CCGCauGUAGCuGUUUGGC-GCG- -5'
17089 5' -53.6 NC_004333.2 + 25216 0.68 0.664394
Target:  5'- gAUCGGag--GCAUCgGGCAGGCCGCGa -3'
miRNA:   3'- -UAGCCcgcaUGUAG-CUGUUUGGCGCg -5'
17089 5' -53.6 NC_004333.2 + 32411 0.68 0.664394
Target:  5'- uAUCGGGCa-GCGaccCGGC-AGCCGUGCa -3'
miRNA:   3'- -UAGCCCGcaUGUa--GCUGuUUGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 9450 0.68 0.664394
Target:  5'- -cCGGGCGccgaggACAaCGAgGAagaaggcccgacGCCGCGCg -3'
miRNA:   3'- uaGCCCGCa-----UGUaGCUgUU------------UGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 19937 0.68 0.664394
Target:  5'- -gCGGGCGUA-AUCGGuCGcACuCGCGCc -3'
miRNA:   3'- uaGCCCGCAUgUAGCU-GUuUG-GCGCG- -5'
17089 5' -53.6 NC_004333.2 + 25867 0.69 0.585976
Target:  5'- uAUC-GGCGUGCGcgCGugAuaaGAUCGCGCg -3'
miRNA:   3'- -UAGcCCGCAUGUa-GCugU---UUGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 37263 0.69 0.563787
Target:  5'- cUCGGcaccgGCGcGCGUCGugAGcggcgugucGCCGCGCu -3'
miRNA:   3'- uAGCC-----CGCaUGUAGCugUU---------UGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 766 0.69 0.574857
Target:  5'- -gCGGGCGg----CGGCAcGAUCGCGCu -3'
miRNA:   3'- uaGCCCGCauguaGCUGU-UUGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 26013 0.69 0.619537
Target:  5'- -aCuGGCcgccgGCAUCGAC--GCCGCGCg -3'
miRNA:   3'- uaGcCCGca---UGUAGCUGuuUGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 9785 0.69 0.574857
Target:  5'- -aCGcGGCGUu--UCG-CGAACCGCGUg -3'
miRNA:   3'- uaGC-CCGCAuguAGCuGUUUGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 32935 0.69 0.585976
Target:  5'- --aGGGCuGgcgcaACAUCGaccgacucgaGCAGGCCGCGCu -3'
miRNA:   3'- uagCCCG-Ca----UGUAGC----------UGUUUGGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.