Results 121 - 125 of 125 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
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P value |
| Predicted miRNA align pattern | |||||||
| 17089 | 5' | -53.6 | NC_004333.2 | + | 25767 | 0.75 | 0.297451 |
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Target: 5'- -gCGGGaCGUugGUCGugGucAugCGCGCg -3' miRNA: 3'- uaGCCC-GCAugUAGCugU--UugGCGCG- -5' |
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| 17089 | 5' | -53.6 | NC_004333.2 | + | 17061 | 0.76 | 0.244193 |
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Target: 5'- cUCGcGGUGUuccagccgcgccggaACAUCGGCGAACCGgGCc -3' miRNA: 3'- uAGC-CCGCA---------------UGUAGCUGUUUGGCgCG- -5' |
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| 17089 | 5' | -53.6 | NC_004333.2 | + | 43530 | 0.79 | 0.156113 |
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Target: 5'- uUCuGGCGUAUcUCGACGauGACCGCGCc -3' miRNA: 3'- uAGcCCGCAUGuAGCUGU--UUGGCGCG- -5' |
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| 17089 | 5' | -53.6 | NC_004333.2 | + | 38319 | 0.83 | 0.09068 |
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Target: 5'- --aGGGCGUGCAUCacguuGACGAACgGCGCg -3' miRNA: 3'- uagCCCGCAUGUAG-----CUGUUUGgCGCG- -5' |
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| 17089 | 5' | -53.6 | NC_004333.2 | + | 40369 | 1.11 | 0.000948 |
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Target: 5'- gAUCGGGCGUACAUCGACAAACCGCGCa -3' miRNA: 3'- -UAGCCCGCAUGUAGCUGUUUGGCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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