miRNA display CGI


Results 41 - 60 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17089 5' -53.6 NC_004333.2 + 11346 0.69 0.597135
Target:  5'- -gCGGcGCGguuCGUCGuCAccuuGCCGCGCu -3'
miRNA:   3'- uaGCC-CGCau-GUAGCuGUu---UGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 37425 0.69 0.579299
Target:  5'- -gCGcGGCGUGCAcguguacugcggcgUGACGAACgGCGCc -3'
miRNA:   3'- uaGC-CCGCAUGUa-------------GCUGUUUGgCGCG- -5'
17089 5' -53.6 NC_004333.2 + 41712 0.69 0.579299
Target:  5'- uUCGGGCGgcacgGCGcgaucaacgaggagaUCGGCGcgggcGACuCGCGCg -3'
miRNA:   3'- uAGCCCGCa----UGU---------------AGCUGU-----UUG-GCGCG- -5'
17089 5' -53.6 NC_004333.2 + 766 0.69 0.574857
Target:  5'- -gCGGGCGg----CGGCAcGAUCGCGCu -3'
miRNA:   3'- uaGCCCGCauguaGCUGU-UUGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 9785 0.69 0.574857
Target:  5'- -aCGcGGCGUu--UCG-CGAACCGCGUg -3'
miRNA:   3'- uaGC-CCGCAuguAGCuGUUUGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 32935 0.69 0.585976
Target:  5'- --aGGGCuGgcgcaACAUCGaccgacucgaGCAGGCCGCGCu -3'
miRNA:   3'- uagCCCG-Ca----UGUAGC----------UGUUUGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 25867 0.69 0.585976
Target:  5'- uAUC-GGCGUGCGcgCGugAuaaGAUCGCGCg -3'
miRNA:   3'- -UAGcCCGCAUGUa-GCugU---UUGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 9273 0.69 0.585976
Target:  5'- aGUCGGuGCGcACcgcgAUCGACAcuGCCGuCGCg -3'
miRNA:   3'- -UAGCC-CGCaUG----UAGCUGUu-UGGC-GCG- -5'
17089 5' -53.6 NC_004333.2 + 2302 0.69 0.597135
Target:  5'- cAUCGGuGCGUACGcgaacgCGGCGAACaacuacacgauCGCGUa -3'
miRNA:   3'- -UAGCC-CGCAUGUa-----GCUGUUUG-----------GCGCG- -5'
17089 5' -53.6 NC_004333.2 + 5208 0.69 0.608325
Target:  5'- -aCGGGCGgcucgcccgugACGgaCGACAAuguGCUGCGCg -3'
miRNA:   3'- uaGCCCGCa----------UGUa-GCUGUU---UGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 26013 0.69 0.619537
Target:  5'- -aCuGGCcgccgGCAUCGAC--GCCGCGCg -3'
miRNA:   3'- uaGcCCGca---UGUAGCUGuuUGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 9450 0.68 0.664394
Target:  5'- -cCGGGCGccgaggACAaCGAgGAagaaggcccgacGCCGCGCg -3'
miRNA:   3'- uaGCCCGCa-----UGUaGCUgUU------------UGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 19937 0.68 0.664394
Target:  5'- -gCGGGCGUA-AUCGGuCGcACuCGCGCc -3'
miRNA:   3'- uaGCCCGCAUgUAGCU-GUuUG-GCGCG- -5'
17089 5' -53.6 NC_004333.2 + 32411 0.68 0.664394
Target:  5'- uAUCGGGCa-GCGaccCGGC-AGCCGUGCa -3'
miRNA:   3'- -UAGCCCGcaUGUa--GCUGuUUGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 25216 0.68 0.664394
Target:  5'- gAUCGGag--GCAUCgGGCAGGCCGCGa -3'
miRNA:   3'- -UAGCCcgcaUGUAG-CUGUUUGGCGCg -5'
17089 5' -53.6 NC_004333.2 + 14183 0.68 0.652078
Target:  5'- -aCGGGCcacgacgauaGCGUCGACGgcaugacGAUCGCGCu -3'
miRNA:   3'- uaGCCCGca--------UGUAGCUGU-------UUGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 14409 0.68 0.640862
Target:  5'- uGUCGcGCGUcuACAUCGAaGAggcggcgaacgguGCCGCGCu -3'
miRNA:   3'- -UAGCcCGCA--UGUAGCUgUU-------------UGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 11320 0.68 0.638617
Target:  5'- cAUUGGGcCGUcuggcagcacucgaGCGcCGGCAAggaGCCGCGCc -3'
miRNA:   3'- -UAGCCC-GCA--------------UGUaGCUGUU---UGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 17374 0.68 0.63076
Target:  5'- cUCGGGC--AUGUCGAgGAcGCUGCGCc -3'
miRNA:   3'- uAGCCCGcaUGUAGCUgUU-UGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 11669 0.68 0.63076
Target:  5'- -cCGGcGCGUuucaggauuuguACGUCGACAAucaGCGCa -3'
miRNA:   3'- uaGCC-CGCA------------UGUAGCUGUUuggCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.