Results 61 - 80 of 125 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
17089 | 5' | -53.6 | NC_004333.2 | + | 13907 | 0.68 | 0.653199 |
Target: 5'- -aCGcGGCGccCGUCGuCGAACCGuCGCc -3' miRNA: 3'- uaGC-CCGCauGUAGCuGUUUGGC-GCG- -5' |
|||||||
17089 | 5' | -53.6 | NC_004333.2 | + | 24135 | 0.68 | 0.653199 |
Target: 5'- gAUCGGGgcaaGUGCuauGUCGGCuacgacAUCGCGCa -3' miRNA: 3'- -UAGCCCg---CAUG---UAGCUGuu----UGGCGCG- -5' |
|||||||
17089 | 5' | -53.6 | NC_004333.2 | + | 14183 | 0.68 | 0.652078 |
Target: 5'- -aCGGGCcacgacgauaGCGUCGACGgcaugacGAUCGCGCu -3' miRNA: 3'- uaGCCCGca--------UGUAGCUGU-------UUGGCGCG- -5' |
|||||||
17089 | 5' | -53.6 | NC_004333.2 | + | 14409 | 0.68 | 0.640862 |
Target: 5'- uGUCGcGCGUcuACAUCGAaGAggcggcgaacgguGCCGCGCu -3' miRNA: 3'- -UAGCcCGCA--UGUAGCUgUU-------------UGGCGCG- -5' |
|||||||
17089 | 5' | -53.6 | NC_004333.2 | + | 11320 | 0.68 | 0.638617 |
Target: 5'- cAUUGGGcCGUcuggcagcacucgaGCGcCGGCAAggaGCCGCGCc -3' miRNA: 3'- -UAGCCC-GCA--------------UGUaGCUGUU---UGGCGCG- -5' |
|||||||
17089 | 5' | -53.6 | NC_004333.2 | + | 32411 | 0.68 | 0.664394 |
Target: 5'- uAUCGGGCa-GCGaccCGGC-AGCCGUGCa -3' miRNA: 3'- -UAGCCCGcaUGUa--GCUGuUUGGCGCG- -5' |
|||||||
17089 | 5' | -53.6 | NC_004333.2 | + | 9450 | 0.68 | 0.664394 |
Target: 5'- -cCGGGCGccgaggACAaCGAgGAagaaggcccgacGCCGCGCg -3' miRNA: 3'- uaGCCCGCa-----UGUaGCUgUU------------UGGCGCG- -5' |
|||||||
17089 | 5' | -53.6 | NC_004333.2 | + | 11669 | 0.68 | 0.63076 |
Target: 5'- -cCGGcGCGUuucaggauuuguACGUCGACAAucaGCGCa -3' miRNA: 3'- uaGCC-CGCA------------UGUAGCUGUUuggCGCG- -5' |
|||||||
17089 | 5' | -53.6 | NC_004333.2 | + | 17374 | 0.68 | 0.63076 |
Target: 5'- cUCGGGC--AUGUCGAgGAcGCUGCGCc -3' miRNA: 3'- uAGCCCGcaUGUAGCUgUU-UGGCGCG- -5' |
|||||||
17089 | 5' | -53.6 | NC_004333.2 | + | 19937 | 0.68 | 0.664394 |
Target: 5'- -gCGGGCGUA-AUCGGuCGcACuCGCGCc -3' miRNA: 3'- uaGCCCGCAUgUAGCU-GUuUG-GCGCG- -5' |
|||||||
17089 | 5' | -53.6 | NC_004333.2 | + | 7315 | 0.67 | 0.686678 |
Target: 5'- cGUCaGGCGuUGCcgCGAgAAACCGCc- -3' miRNA: 3'- -UAGcCCGC-AUGuaGCUgUUUGGCGcg -5' |
|||||||
17089 | 5' | -53.6 | NC_004333.2 | + | 41873 | 0.67 | 0.719666 |
Target: 5'- cGUCGGGCagcUugAcCGgaaACGGACUGCGCa -3' miRNA: 3'- -UAGCCCGc--AugUaGC---UGUUUGGCGCG- -5' |
|||||||
17089 | 5' | -53.6 | NC_004333.2 | + | 43527 | 0.67 | 0.708744 |
Target: 5'- gAUUGcGGCGcGCAagCGcGCGAugCGCGCg -3' miRNA: 3'- -UAGC-CCGCaUGUa-GC-UGUUugGCGCG- -5' |
|||||||
17089 | 5' | -53.6 | NC_004333.2 | + | 3291 | 0.67 | 0.708744 |
Target: 5'- ---cGGCGU-CAUCGggGCGGGCgGCGCg -3' miRNA: 3'- uagcCCGCAuGUAGC--UGUUUGgCGCG- -5' |
|||||||
17089 | 5' | -53.6 | NC_004333.2 | + | 47157 | 0.67 | 0.719666 |
Target: 5'- aGUCGGaGCG-GCG-CGAaAGAUCGCGCu -3' miRNA: 3'- -UAGCC-CGCaUGUaGCUgUUUGGCGCG- -5' |
|||||||
17089 | 5' | -53.6 | NC_004333.2 | + | 34311 | 0.67 | 0.719666 |
Target: 5'- -aUGGGCGUcaagugcgaccgGCggCGACAAugUGCGa -3' miRNA: 3'- uaGCCCGCA------------UGuaGCUGUUugGCGCg -5' |
|||||||
17089 | 5' | -53.6 | NC_004333.2 | + | 20026 | 0.67 | 0.730498 |
Target: 5'- aGUCGGGCaaaGCAcUCGACGGcggcucgccGCCcgGCGCg -3' miRNA: 3'- -UAGCCCGca-UGU-AGCUGUU---------UGG--CGCG- -5' |
|||||||
17089 | 5' | -53.6 | NC_004333.2 | + | 12437 | 0.67 | 0.730498 |
Target: 5'- -gCGGGCGgGCGcuaCGGCGcccccGACCGuCGCg -3' miRNA: 3'- uaGCCCGCaUGUa--GCUGU-----UUGGC-GCG- -5' |
|||||||
17089 | 5' | -53.6 | NC_004333.2 | + | 8294 | 0.67 | 0.730498 |
Target: 5'- -gCGGGCcgGCGUCauccuGCCGCGCa -3' miRNA: 3'- uaGCCCGcaUGUAGcuguuUGGCGCG- -5' |
|||||||
17089 | 5' | -53.6 | NC_004333.2 | + | 8710 | 0.67 | 0.730498 |
Target: 5'- -cCGGGCGccGCGccgagcUCGACG--UCGCGCa -3' miRNA: 3'- uaGCCCGCa-UGU------AGCUGUuuGGCGCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home