Results 81 - 100 of 125 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
17089 | 5' | -53.6 | NC_004333.2 | + | 7315 | 0.67 | 0.686678 |
Target: 5'- cGUCaGGCGuUGCcgCGAgAAACCGCc- -3' miRNA: 3'- -UAGcCCGC-AUGuaGCUgUUUGGCGcg -5' |
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17089 | 5' | -53.6 | NC_004333.2 | + | 8710 | 0.67 | 0.730498 |
Target: 5'- -cCGGGCGccGCGccgagcUCGACG--UCGCGCa -3' miRNA: 3'- uaGCCCGCa-UGU------AGCUGUuuGGCGCG- -5' |
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17089 | 5' | -53.6 | NC_004333.2 | + | 8294 | 0.67 | 0.730498 |
Target: 5'- -gCGGGCcgGCGUCauccuGCCGCGCa -3' miRNA: 3'- uaGCCCGcaUGUAGcuguuUGGCGCG- -5' |
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17089 | 5' | -53.6 | NC_004333.2 | + | 12437 | 0.67 | 0.730498 |
Target: 5'- -gCGGGCGgGCGcuaCGGCGcccccGACCGuCGCg -3' miRNA: 3'- uaGCCCGCaUGUa--GCUGU-----UUGGC-GCG- -5' |
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17089 | 5' | -53.6 | NC_004333.2 | + | 20026 | 0.67 | 0.730498 |
Target: 5'- aGUCGGGCaaaGCAcUCGACGGcggcucgccGCCcgGCGCg -3' miRNA: 3'- -UAGCCCGca-UGU-AGCUGUU---------UGG--CGCG- -5' |
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17089 | 5' | -53.6 | NC_004333.2 | + | 34311 | 0.67 | 0.719666 |
Target: 5'- -aUGGGCGUcaagugcgaccgGCggCGACAAugUGCGa -3' miRNA: 3'- uaGCCCGCA------------UGuaGCUGUUugGCGCg -5' |
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17089 | 5' | -53.6 | NC_004333.2 | + | 47157 | 0.67 | 0.719666 |
Target: 5'- aGUCGGaGCG-GCG-CGAaAGAUCGCGCu -3' miRNA: 3'- -UAGCC-CGCaUGUaGCUgUUUGGCGCG- -5' |
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17089 | 5' | -53.6 | NC_004333.2 | + | 41873 | 0.67 | 0.719666 |
Target: 5'- cGUCGGGCagcUugAcCGgaaACGGACUGCGCa -3' miRNA: 3'- -UAGCCCGc--AugUaGC---UGUUUGGCGCG- -5' |
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17089 | 5' | -53.6 | NC_004333.2 | + | 43527 | 0.67 | 0.708744 |
Target: 5'- gAUUGcGGCGcGCAagCGcGCGAugCGCGCg -3' miRNA: 3'- -UAGC-CCGCaUGUa-GC-UGUUugGCGCG- -5' |
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17089 | 5' | -53.6 | NC_004333.2 | + | 25445 | 0.67 | 0.730498 |
Target: 5'- -cCGGGCGUGCcgguuacgaCGACAcccggGAUCGuCGCg -3' miRNA: 3'- uaGCCCGCAUGua-------GCUGU-----UUGGC-GCG- -5' |
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17089 | 5' | -53.6 | NC_004333.2 | + | 47626 | 0.67 | 0.730498 |
Target: 5'- -aUGGGCG-GCAcguUCGAU---CCGCGCg -3' miRNA: 3'- uaGCCCGCaUGU---AGCUGuuuGGCGCG- -5' |
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17089 | 5' | -53.6 | NC_004333.2 | + | 31383 | 0.66 | 0.782877 |
Target: 5'- -gCGGGCGccgUGC-UCGGCGu-CgGCGCa -3' miRNA: 3'- uaGCCCGC---AUGuAGCUGUuuGgCGCG- -5' |
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17089 | 5' | -53.6 | NC_004333.2 | + | 22902 | 0.66 | 0.761287 |
Target: 5'- -cCGGGCGUaucgcucACGUUcACGAGCgacaGCGCg -3' miRNA: 3'- uaGCCCGCA-------UGUAGcUGUUUGg---CGCG- -5' |
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17089 | 5' | -53.6 | NC_004333.2 | + | 41429 | 0.66 | 0.782877 |
Target: 5'- gGUCGGGCGcgUGC-UCGAgcgccacacguaCAcACuCGCGCg -3' miRNA: 3'- -UAGCCCGC--AUGuAGCU------------GUuUG-GCGCG- -5' |
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17089 | 5' | -53.6 | NC_004333.2 | + | 26601 | 0.66 | 0.792912 |
Target: 5'- gGUCGGcGCGUuCA-CGACAAagcugGCgGCGUu -3' miRNA: 3'- -UAGCC-CGCAuGUaGCUGUU-----UGgCGCG- -5' |
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17089 | 5' | -53.6 | NC_004333.2 | + | 2708 | 0.66 | 0.772679 |
Target: 5'- -aCGccGGCaaGCG-CGAUGAACCGCGCg -3' miRNA: 3'- uaGC--CCGcaUGUaGCUGUUUGGCGCG- -5' |
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17089 | 5' | -53.6 | NC_004333.2 | + | 37728 | 0.66 | 0.782877 |
Target: 5'- gGUCGGGCGcGCGcUCGAUGAAugucugauCCG-GCg -3' miRNA: 3'- -UAGCCCGCaUGU-AGCUGUUU--------GGCgCG- -5' |
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17089 | 5' | -53.6 | NC_004333.2 | + | 27242 | 0.66 | 0.772679 |
Target: 5'- cUCGGGgGcacGCAU-GGCuGAUCGCGCg -3' miRNA: 3'- uAGCCCgCa--UGUAgCUGuUUGGCGCG- -5' |
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17089 | 5' | -53.6 | NC_004333.2 | + | 19718 | 0.66 | 0.751842 |
Target: 5'- -cCGuGGCGaGCuGUUGACGgccagcgucGGCCGCGCu -3' miRNA: 3'- uaGC-CCGCaUG-UAGCUGU---------UUGGCGCG- -5' |
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17089 | 5' | -53.6 | NC_004333.2 | + | 26585 | 0.66 | 0.751842 |
Target: 5'- uGUCGGcGCGccggacuuCAUCGACGGAaauggCGUGCg -3' miRNA: 3'- -UAGCC-CGCau------GUAGCUGUUUg----GCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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