miRNA display CGI


Results 61 - 80 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17089 5' -53.6 NC_004333.2 + 24135 0.68 0.653199
Target:  5'- gAUCGGGgcaaGUGCuauGUCGGCuacgacAUCGCGCa -3'
miRNA:   3'- -UAGCCCg---CAUG---UAGCUGuu----UGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 24801 0.68 0.653199
Target:  5'- -gCGGGC--ACGuUCGGC-AGCUGCGCg -3'
miRNA:   3'- uaGCCCGcaUGU-AGCUGuUUGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 13907 0.68 0.653199
Target:  5'- -aCGcGGCGccCGUCGuCGAACCGuCGCc -3'
miRNA:   3'- uaGC-CCGCauGUAGCuGUUUGGC-GCG- -5'
17089 5' -53.6 NC_004333.2 + 9450 0.68 0.664394
Target:  5'- -cCGGGCGccgaggACAaCGAgGAagaaggcccgacGCCGCGCg -3'
miRNA:   3'- uaGCCCGCa-----UGUaGCUgUU------------UGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 32411 0.68 0.664394
Target:  5'- uAUCGGGCa-GCGaccCGGC-AGCCGUGCa -3'
miRNA:   3'- -UAGCCCGcaUGUa--GCUGuUUGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 19937 0.68 0.664394
Target:  5'- -gCGGGCGUA-AUCGGuCGcACuCGCGCc -3'
miRNA:   3'- uaGCCCGCAUgUAGCU-GUuUG-GCGCG- -5'
17089 5' -53.6 NC_004333.2 + 25216 0.68 0.664394
Target:  5'- gAUCGGag--GCAUCgGGCAGGCCGCGa -3'
miRNA:   3'- -UAGCCcgcaUGUAG-CUGUUUGGCGCg -5'
17089 5' -53.6 NC_004333.2 + 11712 0.68 0.664394
Target:  5'- -cCGGGCG-GCGUgcUGGCGucCUGCGCg -3'
miRNA:   3'- uaGCCCGCaUGUA--GCUGUuuGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 32151 0.68 0.675557
Target:  5'- -aCGcGGCG-ACuGUCGGCAGGCCGgccaCGCg -3'
miRNA:   3'- uaGC-CCGCaUG-UAGCUGUUUGGC----GCG- -5'
17089 5' -53.6 NC_004333.2 + 17162 0.68 0.675557
Target:  5'- aGUCGuGC--GCGUCGACAAgGCCGCuGCg -3'
miRNA:   3'- -UAGCcCGcaUGUAGCUGUU-UGGCG-CG- -5'
17089 5' -53.6 NC_004333.2 + 38661 0.67 0.686678
Target:  5'- -aCGGGCaagucGUACuucGUCGAgCAGcuggccGCCGCGCu -3'
miRNA:   3'- uaGCCCG-----CAUG---UAGCU-GUU------UGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 7315 0.67 0.686678
Target:  5'- cGUCaGGCGuUGCcgCGAgAAACCGCc- -3'
miRNA:   3'- -UAGcCCGC-AUGuaGCUgUUUGGCGcg -5'
17089 5' -53.6 NC_004333.2 + 8867 0.67 0.697744
Target:  5'- uAUCGcGGC-UGCGgcgCGGuuAGCCGCGCa -3'
miRNA:   3'- -UAGC-CCGcAUGUa--GCUguUUGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 11073 0.67 0.697744
Target:  5'- -cCGGGCGUGCGgcccauucCGGgAauGAUCGUGCg -3'
miRNA:   3'- uaGCCCGCAUGUa-------GCUgU--UUGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 32450 0.67 0.697744
Target:  5'- cUCGGcGCccuucagcGCcgCGACGAGCCGCaGCa -3'
miRNA:   3'- uAGCC-CGca------UGuaGCUGUUUGGCG-CG- -5'
17089 5' -53.6 NC_004333.2 + 36325 0.67 0.708744
Target:  5'- -cCGGGCGUcGCAUCGccuacgguuGCAAgauuGCCGUaaGCa -3'
miRNA:   3'- uaGCCCGCA-UGUAGC---------UGUU----UGGCG--CG- -5'
17089 5' -53.6 NC_004333.2 + 3291 0.67 0.708744
Target:  5'- ---cGGCGU-CAUCGggGCGGGCgGCGCg -3'
miRNA:   3'- uagcCCGCAuGUAGC--UGUUUGgCGCG- -5'
17089 5' -53.6 NC_004333.2 + 43527 0.67 0.708744
Target:  5'- gAUUGcGGCGcGCAagCGcGCGAugCGCGCg -3'
miRNA:   3'- -UAGC-CCGCaUGUa-GC-UGUUugGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 18428 0.67 0.708744
Target:  5'- gAUC-GGCG-GCGUCGAC--ACCGCGa -3'
miRNA:   3'- -UAGcCCGCaUGUAGCUGuuUGGCGCg -5'
17089 5' -53.6 NC_004333.2 + 41873 0.67 0.719666
Target:  5'- cGUCGGGCagcUugAcCGgaaACGGACUGCGCa -3'
miRNA:   3'- -UAGCCCGc--AugUaGC---UGUUUGGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.