Results 121 - 125 of 125 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 17089 | 5' | -53.6 | NC_004333.2 | + | 4222 | 0.66 | 0.792912 |
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Target: 5'- -cUGcGCGUugacgcucgagaACAUCGGCGugaggauGCCGCGCa -3' miRNA: 3'- uaGCcCGCA------------UGUAGCUGUu------UGGCGCG- -5' |
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| 17089 | 5' | -53.6 | NC_004333.2 | + | 23457 | 0.66 | 0.792912 |
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Target: 5'- uAUCGGG-GUugaccGCAUUGuuGucGGCCGCGCu -3' miRNA: 3'- -UAGCCCgCA-----UGUAGCugU--UUGGCGCG- -5' |
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| 17089 | 5' | -53.6 | NC_004333.2 | + | 26874 | 0.66 | 0.792912 |
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Target: 5'- -cCGGGC---CGUCGGCAacgAAgCGCGCc -3' miRNA: 3'- uaGCCCGcauGUAGCUGU---UUgGCGCG- -5' |
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| 17089 | 5' | -53.6 | NC_004333.2 | + | 7139 | 0.66 | 0.792912 |
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Target: 5'- -gCGaGaCGUcaacaucauCAUCGACGAGCUGCGCg -3' miRNA: 3'- uaGCcC-GCAu--------GUAGCUGUUUGGCGCG- -5' |
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| 17089 | 5' | -53.6 | NC_004333.2 | + | 26601 | 0.66 | 0.792912 |
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Target: 5'- gGUCGGcGCGUuCA-CGACAAagcugGCgGCGUu -3' miRNA: 3'- -UAGCC-CGCAuGUaGCUGUU-----UGgCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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