miRNA display CGI


Results 61 - 80 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17089 5' -53.6 NC_004333.2 + 20881 0.71 0.498839
Target:  5'- -aUGGGCGg----CGACGAGCCcgGCGCa -3'
miRNA:   3'- uaGCCCGCauguaGCUGUUUGG--CGCG- -5'
17089 5' -53.6 NC_004333.2 + 21022 0.66 0.741227
Target:  5'- -aCGGGCGa----CGAaguGGCCGCGCa -3'
miRNA:   3'- uaGCCCGCauguaGCUgu-UUGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 21987 0.66 0.740159
Target:  5'- -gCGGGcCGUuuucuuuGCGUCGGCGcgAAUCaGCGCg -3'
miRNA:   3'- uaGCCC-GCA-------UGUAGCUGU--UUGG-CGCG- -5'
17089 5' -53.6 NC_004333.2 + 22023 0.66 0.751842
Target:  5'- -gCGGGCGUuuucucgacGCAgaUCacgcgggcgGACAGAUCGUGCa -3'
miRNA:   3'- uaGCCCGCA---------UGU--AG---------CUGUUUGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 22902 0.66 0.761287
Target:  5'- -cCGGGCGUaucgcucACGUUcACGAGCgacaGCGCg -3'
miRNA:   3'- uaGCCCGCA-------UGUAGcUGUUUGg---CGCG- -5'
17089 5' -53.6 NC_004333.2 + 23220 0.7 0.509452
Target:  5'- -aCGGGCGauggcaccaACAUCGucCAGuCCGCGCg -3'
miRNA:   3'- uaGCCCGCa--------UGUAGCu-GUUuGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 23457 0.66 0.792912
Target:  5'- uAUCGGG-GUugaccGCAUUGuuGucGGCCGCGCu -3'
miRNA:   3'- -UAGCCCgCA-----UGUAGCugU--UUGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 24107 0.68 0.63076
Target:  5'- --aGcGCGUugAUCGACGGACagucgcaGCGCg -3'
miRNA:   3'- uagCcCGCAugUAGCUGUUUGg------CGCG- -5'
17089 5' -53.6 NC_004333.2 + 24135 0.68 0.653199
Target:  5'- gAUCGGGgcaaGUGCuauGUCGGCuacgacAUCGCGCa -3'
miRNA:   3'- -UAGCCCg---CAUG---UAGCUGuu----UGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 24801 0.68 0.653199
Target:  5'- -gCGGGC--ACGuUCGGC-AGCUGCGCg -3'
miRNA:   3'- uaGCCCGcaUGU-AGCUGuUUGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 25076 0.66 0.782877
Target:  5'- -cCGuGGCGaucaGCGU-GACAGGCgGCGCg -3'
miRNA:   3'- uaGC-CCGCa---UGUAgCUGUUUGgCGCG- -5'
17089 5' -53.6 NC_004333.2 + 25216 0.68 0.664394
Target:  5'- gAUCGGag--GCAUCgGGCAGGCCGCGa -3'
miRNA:   3'- -UAGCCcgcaUGUAG-CUGUUUGGCGCg -5'
17089 5' -53.6 NC_004333.2 + 25275 0.71 0.467619
Target:  5'- -gCGGGCGUcgACGUCGAg---UCGCGCa -3'
miRNA:   3'- uaGCCCGCA--UGUAGCUguuuGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 25305 0.66 0.741227
Target:  5'- -cCGGGCcgACGcCGGCGAcuGCCGCGa -3'
miRNA:   3'- uaGCCCGcaUGUaGCUGUU--UGGCGCg -5'
17089 5' -53.6 NC_004333.2 + 25445 0.67 0.730498
Target:  5'- -cCGGGCGUGCcgguuacgaCGACAcccggGAUCGuCGCg -3'
miRNA:   3'- uaGCCCGCAUGua-------GCUGU-----UUGGC-GCG- -5'
17089 5' -53.6 NC_004333.2 + 25554 0.73 0.371623
Target:  5'- -gCGGGuCG-ACAUUGGCGAucaGCUGCGCa -3'
miRNA:   3'- uaGCCC-GCaUGUAGCUGUU---UGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 25767 0.75 0.297451
Target:  5'- -gCGGGaCGUugGUCGugGucAugCGCGCg -3'
miRNA:   3'- uaGCCC-GCAugUAGCugU--UugGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 25867 0.69 0.585976
Target:  5'- uAUC-GGCGUGCGcgCGugAuaaGAUCGCGCg -3'
miRNA:   3'- -UAGcCCGCAUGUa-GCugU---UUGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 26013 0.69 0.619537
Target:  5'- -aCuGGCcgccgGCAUCGAC--GCCGCGCg -3'
miRNA:   3'- uaGcCCGca---UGUAGCUGuuUGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 26585 0.66 0.751842
Target:  5'- uGUCGGcGCGccggacuuCAUCGACGGAaauggCGUGCg -3'
miRNA:   3'- -UAGCC-CGCau------GUAGCUGUUUg----GCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.