miRNA display CGI


Results 81 - 100 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17089 5' -53.6 NC_004333.2 + 26601 0.66 0.792912
Target:  5'- gGUCGGcGCGUuCA-CGACAAagcugGCgGCGUu -3'
miRNA:   3'- -UAGCC-CGCAuGUaGCUGUU-----UGgCGCG- -5'
17089 5' -53.6 NC_004333.2 + 26690 0.67 0.719666
Target:  5'- gGUCGccaGGUGUAUggauGUCGAUgcccGCCGCGCc -3'
miRNA:   3'- -UAGC---CCGCAUG----UAGCUGuu--UGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 26874 0.66 0.792912
Target:  5'- -cCGGGC---CGUCGGCAacgAAgCGCGCc -3'
miRNA:   3'- uaGCCCGcauGUAGCUGU---UUgGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 27190 0.72 0.447374
Target:  5'- -cCGaGGUGUGg--CGGCAGACCGUGCu -3'
miRNA:   3'- uaGC-CCGCAUguaGCUGUUUGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 27242 0.66 0.772679
Target:  5'- cUCGGGgGcacGCAU-GGCuGAUCGCGCg -3'
miRNA:   3'- uAGCCCgCa--UGUAgCUGuUUGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 28167 0.7 0.541827
Target:  5'- uUC-GGCGUGCcgcUCGACAcgaugaaccaGAUCGCGCg -3'
miRNA:   3'- uAGcCCGCAUGu--AGCUGU----------UUGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 29184 0.68 0.641984
Target:  5'- gGUCGGGCcgcUGCA-CGAac--CCGCGCa -3'
miRNA:   3'- -UAGCCCGc--AUGUaGCUguuuGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 29883 0.72 0.437436
Target:  5'- cGUCGGcgaaGCGcUGCG-CGAuCGGGCCGCGCg -3'
miRNA:   3'- -UAGCC----CGC-AUGUaGCU-GUUUGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 30146 0.71 0.457437
Target:  5'- cGUCGGcGCuacgGCAUCGAC---CCGCGCu -3'
miRNA:   3'- -UAGCC-CGca--UGUAGCUGuuuGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 31213 0.7 0.520159
Target:  5'- -gCGGGCGgcgaUGCAuUCGcCGGGCuCGCGCg -3'
miRNA:   3'- uaGCCCGC----AUGU-AGCuGUUUG-GCGCG- -5'
17089 5' -53.6 NC_004333.2 + 31383 0.66 0.782877
Target:  5'- -gCGGGCGccgUGC-UCGGCGu-CgGCGCa -3'
miRNA:   3'- uaGCCCGC---AUGuAGCUGUuuGgCGCG- -5'
17089 5' -53.6 NC_004333.2 + 31852 0.66 0.741227
Target:  5'- gAUCGGGCGcAUGUCGcACGAcaCGCGa -3'
miRNA:   3'- -UAGCCCGCaUGUAGC-UGUUugGCGCg -5'
17089 5' -53.6 NC_004333.2 + 32098 0.66 0.741227
Target:  5'- cGUCGGcGCGUuCAgugaCGGCAGuuCCGaCGCg -3'
miRNA:   3'- -UAGCC-CGCAuGUa---GCUGUUu-GGC-GCG- -5'
17089 5' -53.6 NC_004333.2 + 32151 0.68 0.675557
Target:  5'- -aCGcGGCG-ACuGUCGGCAGGCCGgccaCGCg -3'
miRNA:   3'- uaGC-CCGCaUG-UAGCUGUUUGGC----GCG- -5'
17089 5' -53.6 NC_004333.2 + 32411 0.68 0.664394
Target:  5'- uAUCGGGCa-GCGaccCGGC-AGCCGUGCa -3'
miRNA:   3'- -UAGCCCGcaUGUa--GCUGuUUGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 32450 0.67 0.697744
Target:  5'- cUCGGcGCccuucagcGCcgCGACGAGCCGCaGCa -3'
miRNA:   3'- uAGCC-CGca------UGuaGCUGUUUGGCG-CG- -5'
17089 5' -53.6 NC_004333.2 + 32935 0.69 0.585976
Target:  5'- --aGGGCuGgcgcaACAUCGaccgacucgaGCAGGCCGCGCu -3'
miRNA:   3'- uagCCCG-Ca----UGUAGC----------UGUUUGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 34311 0.67 0.719666
Target:  5'- -aUGGGCGUcaagugcgaccgGCggCGACAAugUGCGa -3'
miRNA:   3'- uaGCCCGCA------------UGuaGCUGUUugGCGCg -5'
17089 5' -53.6 NC_004333.2 + 36325 0.67 0.708744
Target:  5'- -cCGGGCGUcGCAUCGccuacgguuGCAAgauuGCCGUaaGCa -3'
miRNA:   3'- uaGCCCGCA-UGUAGC---------UGUU----UGGCG--CG- -5'
17089 5' -53.6 NC_004333.2 + 37263 0.69 0.563787
Target:  5'- cUCGGcaccgGCGcGCGUCGugAGcggcgugucGCCGCGCu -3'
miRNA:   3'- uAGCC-----CGCaUGUAGCugUU---------UGGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.