miRNA display CGI


Results 61 - 80 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17089 5' -53.6 NC_004333.2 + 22902 0.66 0.761287
Target:  5'- -cCGGGCGUaucgcucACGUUcACGAGCgacaGCGCg -3'
miRNA:   3'- uaGCCCGCA-------UGUAGcUGUUUGg---CGCG- -5'
17089 5' -53.6 NC_004333.2 + 22023 0.66 0.751842
Target:  5'- -gCGGGCGUuuucucgacGCAgaUCacgcgggcgGACAGAUCGUGCa -3'
miRNA:   3'- uaGCCCGCA---------UGU--AG---------CUGUUUGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 21987 0.66 0.740159
Target:  5'- -gCGGGcCGUuuucuuuGCGUCGGCGcgAAUCaGCGCg -3'
miRNA:   3'- uaGCCC-GCA-------UGUAGCUGU--UUGG-CGCG- -5'
17089 5' -53.6 NC_004333.2 + 21022 0.66 0.741227
Target:  5'- -aCGGGCGa----CGAaguGGCCGCGCa -3'
miRNA:   3'- uaGCCCGCauguaGCUgu-UUGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 20881 0.71 0.498839
Target:  5'- -aUGGGCGg----CGACGAGCCcgGCGCa -3'
miRNA:   3'- uaGCCCGCauguaGCUGUUUGG--CGCG- -5'
17089 5' -53.6 NC_004333.2 + 20625 0.66 0.782877
Target:  5'- aGUCGGGCcaauucgacgcGaGCGUCG-CAAcggcGCUGCGCc -3'
miRNA:   3'- -UAGCCCG-----------CaUGUAGCuGUU----UGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 20178 0.66 0.741227
Target:  5'- cUCGGGCGcACAcaagaaggCGGCAGuaaugggcgcgGCuCGCGCu -3'
miRNA:   3'- uAGCCCGCaUGUa-------GCUGUU-----------UG-GCGCG- -5'
17089 5' -53.6 NC_004333.2 + 20026 0.67 0.730498
Target:  5'- aGUCGGGCaaaGCAcUCGACGGcggcucgccGCCcgGCGCg -3'
miRNA:   3'- -UAGCCCGca-UGU-AGCUGUU---------UGG--CGCG- -5'
17089 5' -53.6 NC_004333.2 + 19937 0.68 0.664394
Target:  5'- -gCGGGCGUA-AUCGGuCGcACuCGCGCc -3'
miRNA:   3'- uaGCCCGCAUgUAGCU-GUuUG-GCGCG- -5'
17089 5' -53.6 NC_004333.2 + 19886 0.7 0.520159
Target:  5'- gAUCGGGCcgGCAUCGGucAGCaGCGCa -3'
miRNA:   3'- -UAGCCCGcaUGUAGCUguUUGgCGCG- -5'
17089 5' -53.6 NC_004333.2 + 19718 0.66 0.751842
Target:  5'- -cCGuGGCGaGCuGUUGACGgccagcgucGGCCGCGCu -3'
miRNA:   3'- uaGC-CCGCaUG-UAGCUGU---------UUGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 19568 0.67 0.719666
Target:  5'- gGUCGGcGCG-GCAcaaGGgGAAUCGCGCg -3'
miRNA:   3'- -UAGCC-CGCaUGUag-CUgUUUGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 18428 0.67 0.708744
Target:  5'- gAUC-GGCG-GCGUCGAC--ACCGCGa -3'
miRNA:   3'- -UAGcCCGCaUGUAGCUGuuUGGCGCg -5'
17089 5' -53.6 NC_004333.2 + 18279 0.7 0.530953
Target:  5'- -cCGGcGCGUAUugCGAU--GCCGCGCg -3'
miRNA:   3'- uaGCC-CGCAUGuaGCUGuuUGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 17499 0.7 0.530953
Target:  5'- -cCGGGCGacguuUugAUCGuCAgcgcgucguGACCGCGCu -3'
miRNA:   3'- uaGCCCGC-----AugUAGCuGU---------UUGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 17374 0.68 0.63076
Target:  5'- cUCGGGC--AUGUCGAgGAcGCUGCGCc -3'
miRNA:   3'- uAGCCCGcaUGUAGCUgUU-UGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 17162 0.68 0.675557
Target:  5'- aGUCGuGC--GCGUCGACAAgGCCGCuGCg -3'
miRNA:   3'- -UAGCcCGcaUGUAGCUGUU-UGGCG-CG- -5'
17089 5' -53.6 NC_004333.2 + 17061 0.76 0.244193
Target:  5'- cUCGcGGUGUuccagccgcgccggaACAUCGGCGAACCGgGCc -3'
miRNA:   3'- uAGC-CCGCA---------------UGUAGCUGUUUGGCgCG- -5'
17089 5' -53.6 NC_004333.2 + 15081 0.72 0.398996
Target:  5'- uUCGcGGCGUcgGCGUCGGCGGcCCGCu- -3'
miRNA:   3'- uAGC-CCGCA--UGUAGCUGUUuGGCGcg -5'
17089 5' -53.6 NC_004333.2 + 14409 0.68 0.640862
Target:  5'- uGUCGcGCGUcuACAUCGAaGAggcggcgaacgguGCCGCGCu -3'
miRNA:   3'- -UAGCcCGCA--UGUAGCUgUU-------------UGGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.