miRNA display CGI


Results 81 - 100 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17089 5' -53.6 NC_004333.2 + 14183 0.68 0.652078
Target:  5'- -aCGGGCcacgacgauaGCGUCGACGgcaugacGAUCGCGCu -3'
miRNA:   3'- uaGCCCGca--------UGUAGCUGU-------UUGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 13907 0.68 0.653199
Target:  5'- -aCGcGGCGccCGUCGuCGAACCGuCGCc -3'
miRNA:   3'- uaGC-CCGCauGUAGCuGUUUGGC-GCG- -5'
17089 5' -53.6 NC_004333.2 + 13848 0.74 0.332202
Target:  5'- -aCGGGCGccGCGUCGAgcgcauugagcgcgcCGcGCCGCGCg -3'
miRNA:   3'- uaGCCCGCa-UGUAGCU---------------GUuUGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 13180 0.74 0.337166
Target:  5'- cUCGcgauGcCGUACAUCGACAAcugGCUGCGCa -3'
miRNA:   3'- uAGCc---C-GCAUGUAGCUGUU---UGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 13068 0.7 0.541827
Target:  5'- -cCGGcGCGaACGUCGAUuugucGAugCGCGCc -3'
miRNA:   3'- uaGCC-CGCaUGUAGCUG-----UUugGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 12986 0.72 0.447374
Target:  5'- cUC-GGCGcGCAUCGACAAAUCGaCGUu -3'
miRNA:   3'- uAGcCCGCaUGUAGCUGUUUGGC-GCG- -5'
17089 5' -53.6 NC_004333.2 + 12529 0.7 0.527706
Target:  5'- -cCGGGCGUGCcggccgacgacgauAUCGACGGugUGCu- -3'
miRNA:   3'- uaGCCCGCAUG--------------UAGCUGUUugGCGcg -5'
17089 5' -53.6 NC_004333.2 + 12437 0.67 0.730498
Target:  5'- -gCGGGCGgGCGcuaCGGCGcccccGACCGuCGCg -3'
miRNA:   3'- uaGCCCGCaUGUa--GCUGU-----UUGGC-GCG- -5'
17089 5' -53.6 NC_004333.2 + 11712 0.68 0.664394
Target:  5'- -cCGGGCG-GCGUgcUGGCGucCUGCGCg -3'
miRNA:   3'- uaGCCCGCaUGUA--GCUGUuuGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 11669 0.68 0.63076
Target:  5'- -cCGGcGCGUuucaggauuuguACGUCGACAAucaGCGCa -3'
miRNA:   3'- uaGCC-CGCA------------UGUAGCUGUUuggCGCG- -5'
17089 5' -53.6 NC_004333.2 + 11428 0.73 0.389729
Target:  5'- cGUCGaGCGcgGCAaggugaCGACGAACCGCGCc -3'
miRNA:   3'- -UAGCcCGCa-UGUa-----GCUGUUUGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 11346 0.69 0.597135
Target:  5'- -gCGGcGCGguuCGUCGuCAccuuGCCGCGCu -3'
miRNA:   3'- uaGCC-CGCau-GUAGCuGUu---UGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 11320 0.68 0.638617
Target:  5'- cAUUGGGcCGUcuggcagcacucgaGCGcCGGCAAggaGCCGCGCc -3'
miRNA:   3'- -UAGCCC-GCA--------------UGUaGCUGUU---UGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 11073 0.67 0.697744
Target:  5'- -cCGGGCGUGCGgcccauucCGGgAauGAUCGUGCg -3'
miRNA:   3'- uaGCCCGCAUGUa-------GCUgU--UUGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 10569 0.73 0.380604
Target:  5'- uAUCGGGC--GCAUCG-CAGGCgGUGCu -3'
miRNA:   3'- -UAGCCCGcaUGUAGCuGUUUGgCGCG- -5'
17089 5' -53.6 NC_004333.2 + 10371 0.7 0.509452
Target:  5'- --aGGGCGUGCuaaGAU--GCCGCGUa -3'
miRNA:   3'- uagCCCGCAUGuagCUGuuUGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 10207 0.66 0.792912
Target:  5'- -gCGcauGCGgcCGUCGGCAucaaAGCUGCGCg -3'
miRNA:   3'- uaGCc--CGCauGUAGCUGU----UUGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 9785 0.69 0.574857
Target:  5'- -aCGcGGCGUu--UCG-CGAACCGCGUg -3'
miRNA:   3'- uaGC-CCGCAuguAGCuGUUUGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 9604 0.7 0.509452
Target:  5'- -cCGGcGCG-GCAUCGGCcGGuuGCGCa -3'
miRNA:   3'- uaGCC-CGCaUGUAGCUGuUUggCGCG- -5'
17089 5' -53.6 NC_004333.2 + 9450 0.68 0.664394
Target:  5'- -cCGGGCGccgaggACAaCGAgGAagaaggcccgacGCCGCGCg -3'
miRNA:   3'- uaGCCCGCa-----UGUaGCUgUU------------UGGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.