miRNA display CGI


Results 41 - 60 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17089 5' -53.6 NC_004333.2 + 41712 0.69 0.579299
Target:  5'- uUCGGGCGgcacgGCGcgaucaacgaggagaUCGGCGcgggcGACuCGCGCg -3'
miRNA:   3'- uAGCCCGCa----UGU---------------AGCUGU-----UUG-GCGCG- -5'
17089 5' -53.6 NC_004333.2 + 25767 0.75 0.297451
Target:  5'- -gCGGGaCGUugGUCGugGucAugCGCGCg -3'
miRNA:   3'- uaGCCC-GCAugUAGCugU--UugGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 25554 0.73 0.371623
Target:  5'- -gCGGGuCG-ACAUUGGCGAucaGCUGCGCa -3'
miRNA:   3'- uaGCCC-GCaUGUAGCUGUU---UGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 45301 0.72 0.417947
Target:  5'- cUCGaGGCGUucgagaaggGCAUCGACGGuuacaagcucGCCGCGa -3'
miRNA:   3'- uAGC-CCGCA---------UGUAGCUGUU----------UGGCGCg -5'
17089 5' -53.6 NC_004333.2 + 20625 0.66 0.782877
Target:  5'- aGUCGGGCcaauucgacgcGaGCGUCG-CAAcggcGCUGCGCc -3'
miRNA:   3'- -UAGCCCG-----------CaUGUAGCuGUU----UGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 32098 0.66 0.741227
Target:  5'- cGUCGGcGCGUuCAgugaCGGCAGuuCCGaCGCg -3'
miRNA:   3'- -UAGCC-CGCAuGUa---GCUGUUu-GGC-GCG- -5'
17089 5' -53.6 NC_004333.2 + 21022 0.66 0.741227
Target:  5'- -aCGGGCGa----CGAaguGGCCGCGCa -3'
miRNA:   3'- uaGCCCGCauguaGCUgu-UUGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 1627 0.67 0.734802
Target:  5'- gGUCGaauGCGU-CGUCGGCGGcguagcccugaaugcGCUGCGCg -3'
miRNA:   3'- -UAGCc--CGCAuGUAGCUGUU---------------UGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 26690 0.67 0.719666
Target:  5'- gGUCGccaGGUGUAUggauGUCGAUgcccGCCGCGCc -3'
miRNA:   3'- -UAGC---CCGCAUG----UAGCUGuu--UGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 8867 0.67 0.697744
Target:  5'- uAUCGcGGC-UGCGgcgCGGuuAGCCGCGCa -3'
miRNA:   3'- -UAGC-CCGcAUGUa--GCUguUUGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 17162 0.68 0.675557
Target:  5'- aGUCGuGC--GCGUCGACAAgGCCGCuGCg -3'
miRNA:   3'- -UAGCcCGcaUGUAGCUGUU-UGGCG-CG- -5'
17089 5' -53.6 NC_004333.2 + 29184 0.68 0.641984
Target:  5'- gGUCGGGCcgcUGCA-CGAac--CCGCGCa -3'
miRNA:   3'- -UAGCCCGc--AUGUaGCUguuuGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 11346 0.69 0.597135
Target:  5'- -gCGGcGCGguuCGUCGuCAccuuGCCGCGCu -3'
miRNA:   3'- uaGCC-CGCau-GUAGCuGUu---UGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 20881 0.71 0.498839
Target:  5'- -aUGGGCGg----CGACGAGCCcgGCGCa -3'
miRNA:   3'- uaGCCCGCauguaGCUGUUUGG--CGCG- -5'
17089 5' -53.6 NC_004333.2 + 12986 0.72 0.447374
Target:  5'- cUC-GGCGcGCAUCGACAAAUCGaCGUu -3'
miRNA:   3'- uAGcCCGCaUGUAGCUGUUUGGC-GCG- -5'
17089 5' -53.6 NC_004333.2 + 36325 0.67 0.708744
Target:  5'- -cCGGGCGUcGCAUCGccuacgguuGCAAgauuGCCGUaaGCa -3'
miRNA:   3'- uaGCCCGCA-UGUAGC---------UGUU----UGGCG--CG- -5'
17089 5' -53.6 NC_004333.2 + 4939 0.71 0.467619
Target:  5'- gGUCaGcGGCGgcagcgGCAUCGGCAcGgCGCGCg -3'
miRNA:   3'- -UAG-C-CCGCa-----UGUAGCUGUuUgGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 25216 0.68 0.664394
Target:  5'- gAUCGGag--GCAUCgGGCAGGCCGCGa -3'
miRNA:   3'- -UAGCCcgcaUGUAG-CUGUUUGGCGCg -5'
17089 5' -53.6 NC_004333.2 + 26585 0.66 0.751842
Target:  5'- uGUCGGcGCGccggacuuCAUCGACGGAaauggCGUGCg -3'
miRNA:   3'- -UAGCC-CGCau------GUAGCUGUUUg----GCGCG- -5'
17089 5' -53.6 NC_004333.2 + 32411 0.68 0.664394
Target:  5'- uAUCGGGCa-GCGaccCGGC-AGCCGUGCa -3'
miRNA:   3'- -UAGCCCGcaUGUa--GCUGuUUGGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.