miRNA display CGI


Results 61 - 80 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17089 5' -53.6 NC_004333.2 + 31383 0.66 0.782877
Target:  5'- -gCGGGCGccgUGC-UCGGCGu-CgGCGCa -3'
miRNA:   3'- uaGCCCGC---AUGuAGCUGUuuGgCGCG- -5'
17089 5' -53.6 NC_004333.2 + 10371 0.7 0.509452
Target:  5'- --aGGGCGUGCuaaGAU--GCCGCGUa -3'
miRNA:   3'- uagCCCGCAUGuagCUGuuUGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 19937 0.68 0.664394
Target:  5'- -gCGGGCGUA-AUCGGuCGcACuCGCGCc -3'
miRNA:   3'- uaGCCCGCAUgUAGCU-GUuUG-GCGCG- -5'
17089 5' -53.6 NC_004333.2 + 25216 0.68 0.664394
Target:  5'- gAUCGGag--GCAUCgGGCAGGCCGCGa -3'
miRNA:   3'- -UAGCCcgcaUGUAG-CUGUUUGGCGCg -5'
17089 5' -53.6 NC_004333.2 + 22902 0.66 0.761287
Target:  5'- -cCGGGCGUaucgcucACGUUcACGAGCgacaGCGCg -3'
miRNA:   3'- uaGCCCGCA-------UGUAGcUGUUUGg---CGCG- -5'
17089 5' -53.6 NC_004333.2 + 19718 0.66 0.751842
Target:  5'- -cCGuGGCGaGCuGUUGACGgccagcgucGGCCGCGCu -3'
miRNA:   3'- uaGC-CCGCaUG-UAGCUGU---------UUGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 26585 0.66 0.751842
Target:  5'- uGUCGGcGCGccggacuuCAUCGACGGAaauggCGUGCg -3'
miRNA:   3'- -UAGCC-CGCau------GUAGCUGUUUg----GCGCG- -5'
17089 5' -53.6 NC_004333.2 + 28167 0.7 0.541827
Target:  5'- uUC-GGCGUGCcgcUCGACAcgaugaaccaGAUCGCGCg -3'
miRNA:   3'- uAGcCCGCAUGu--AGCUGU----------UUGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 18279 0.7 0.530953
Target:  5'- -cCGGcGCGUAUugCGAU--GCCGCGCg -3'
miRNA:   3'- uaGCC-CGCAUGuaGCUGuuUGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 7315 0.67 0.686678
Target:  5'- cGUCaGGCGuUGCcgCGAgAAACCGCc- -3'
miRNA:   3'- -UAGcCCGC-AUGuaGCUgUUUGGCGcg -5'
17089 5' -53.6 NC_004333.2 + 40105 0.7 0.530953
Target:  5'- -gCGaGGCGUccGCGcCGugGcGCCGCGCg -3'
miRNA:   3'- uaGC-CCGCA--UGUaGCugUuUGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 12529 0.7 0.527706
Target:  5'- -cCGGGCGUGCcggccgacgacgauAUCGACGGugUGCu- -3'
miRNA:   3'- uaGCCCGCAUG--------------UAGCUGUUugGCGcg -5'
17089 5' -53.6 NC_004333.2 + 19886 0.7 0.520159
Target:  5'- gAUCGGGCcgGCAUCGGucAGCaGCGCa -3'
miRNA:   3'- -UAGCCCGcaUGUAGCUguUUGgCGCG- -5'
17089 5' -53.6 NC_004333.2 + 31213 0.7 0.520159
Target:  5'- -gCGGGCGgcgaUGCAuUCGcCGGGCuCGCGCg -3'
miRNA:   3'- uaGCCCGC----AUGU-AGCuGUUUG-GCGCG- -5'
17089 5' -53.6 NC_004333.2 + 42211 0.7 0.516937
Target:  5'- cUCGGGCGUgagcgucaugucguGCAcCGGCAAcUgGCGCa -3'
miRNA:   3'- uAGCCCGCA--------------UGUaGCUGUUuGgCGCG- -5'
17089 5' -53.6 NC_004333.2 + 23220 0.7 0.509452
Target:  5'- -aCGGGCGauggcaccaACAUCGucCAGuCCGCGCg -3'
miRNA:   3'- uaGCCCGCa--------UGUAGCu-GUUuGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 4939 0.71 0.467619
Target:  5'- gGUCaGcGGCGgcagcgGCAUCGGCAcGgCGCGCg -3'
miRNA:   3'- -UAG-C-CCGCa-----UGUAGCUGUuUgGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 30146 0.71 0.457437
Target:  5'- cGUCGGcGCuacgGCAUCGAC---CCGCGCu -3'
miRNA:   3'- -UAGCC-CGca--UGUAGCUGuuuGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 45768 0.72 0.408403
Target:  5'- -gCaGGCGUGCGUUGugGuagcuGAUCGCGCg -3'
miRNA:   3'- uaGcCCGCAUGUAGCugU-----UUGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 17499 0.7 0.530953
Target:  5'- -cCGGGCGacguuUugAUCGuCAgcgcgucguGACCGCGCu -3'
miRNA:   3'- uaGCCCGC-----AugUAGCuGU---------UUGGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.