miRNA display CGI


Results 81 - 100 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17089 5' -53.6 NC_004333.2 + 5208 0.69 0.608325
Target:  5'- -aCGGGCGgcucgcccgugACGgaCGACAAuguGCUGCGCg -3'
miRNA:   3'- uaGCCCGCa----------UGUa-GCUGUU---UGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 2302 0.69 0.597135
Target:  5'- cAUCGGuGCGUACGcgaacgCGGCGAACaacuacacgauCGCGUa -3'
miRNA:   3'- -UAGCC-CGCAUGUa-----GCUGUUUG-----------GCGCG- -5'
17089 5' -53.6 NC_004333.2 + 17499 0.7 0.530953
Target:  5'- -cCGGGCGacguuUugAUCGuCAgcgcgucguGACCGCGCu -3'
miRNA:   3'- uaGCCCGC-----AugUAGCuGU---------UUGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 40105 0.7 0.530953
Target:  5'- -gCGaGGCGUccGCGcCGugGcGCCGCGCg -3'
miRNA:   3'- uaGC-CCGCA--UGUaGCugUuUGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 12529 0.7 0.527706
Target:  5'- -cCGGGCGUGCcggccgacgacgauAUCGACGGugUGCu- -3'
miRNA:   3'- uaGCCCGCAUG--------------UAGCUGUUugGCGcg -5'
17089 5' -53.6 NC_004333.2 + 19886 0.7 0.520159
Target:  5'- gAUCGGGCcgGCAUCGGucAGCaGCGCa -3'
miRNA:   3'- -UAGCCCGcaUGUAGCUguUUGgCGCG- -5'
17089 5' -53.6 NC_004333.2 + 31213 0.7 0.520159
Target:  5'- -gCGGGCGgcgaUGCAuUCGcCGGGCuCGCGCg -3'
miRNA:   3'- uaGCCCGC----AUGU-AGCuGUUUG-GCGCG- -5'
17089 5' -53.6 NC_004333.2 + 42211 0.7 0.516937
Target:  5'- cUCGGGCGUgagcgucaugucguGCAcCGGCAAcUgGCGCa -3'
miRNA:   3'- uAGCCCGCA--------------UGUaGCUGUUuGgCGCG- -5'
17089 5' -53.6 NC_004333.2 + 10371 0.7 0.509452
Target:  5'- --aGGGCGUGCuaaGAU--GCCGCGUa -3'
miRNA:   3'- uagCCCGCAUGuagCUGuuUGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 23220 0.7 0.509452
Target:  5'- -aCGGGCGauggcaccaACAUCGucCAGuCCGCGCg -3'
miRNA:   3'- uaGCCCGCa--------UGUAGCu-GUUuGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 18279 0.7 0.530953
Target:  5'- -cCGGcGCGUAUugCGAU--GCCGCGCg -3'
miRNA:   3'- uaGCC-CGCAUGuaGCUGuuUGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 28167 0.7 0.541827
Target:  5'- uUC-GGCGUGCcgcUCGACAcgaugaaccaGAUCGCGCg -3'
miRNA:   3'- uAGcCCGCAUGu--AGCUGU----------UUGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 9273 0.69 0.585976
Target:  5'- aGUCGGuGCGcACcgcgAUCGACAcuGCCGuCGCg -3'
miRNA:   3'- -UAGCC-CGCaUG----UAGCUGUu-UGGC-GCG- -5'
17089 5' -53.6 NC_004333.2 + 25867 0.69 0.585976
Target:  5'- uAUC-GGCGUGCGcgCGugAuaaGAUCGCGCg -3'
miRNA:   3'- -UAGcCCGCAUGUa-GCugU---UUGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 32935 0.69 0.585976
Target:  5'- --aGGGCuGgcgcaACAUCGaccgacucgaGCAGGCCGCGCu -3'
miRNA:   3'- uagCCCG-Ca----UGUAGC----------UGUUUGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 9785 0.69 0.574857
Target:  5'- -aCGcGGCGUu--UCG-CGAACCGCGUg -3'
miRNA:   3'- uaGC-CCGCAuguAGCuGUUUGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 766 0.69 0.574857
Target:  5'- -gCGGGCGg----CGGCAcGAUCGCGCu -3'
miRNA:   3'- uaGCCCGCauguaGCUGU-UUGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 37263 0.69 0.563787
Target:  5'- cUCGGcaccgGCGcGCGUCGugAGcggcgugucGCCGCGCu -3'
miRNA:   3'- uAGCC-----CGCaUGUAGCugUU---------UGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 7509 0.7 0.552774
Target:  5'- cGUCGGGCcgucucGUGCAgcucUgGGC--GCCGCGCg -3'
miRNA:   3'- -UAGCCCG------CAUGU----AgCUGuuUGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 13068 0.7 0.541827
Target:  5'- -cCGGcGCGaACGUCGAUuugucGAugCGCGCc -3'
miRNA:   3'- uaGCC-CGCaUGUAGCUG-----UUugGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.