Results 101 - 120 of 125 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17089 | 5' | -53.6 | NC_004333.2 | + | 42211 | 0.7 | 0.516937 |
Target: 5'- cUCGGGCGUgagcgucaugucguGCAcCGGCAAcUgGCGCa -3' miRNA: 3'- uAGCCCGCA--------------UGUaGCUGUUuGgCGCG- -5' |
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17089 | 5' | -53.6 | NC_004333.2 | + | 10371 | 0.7 | 0.509452 |
Target: 5'- --aGGGCGUGCuaaGAU--GCCGCGUa -3' miRNA: 3'- uagCCCGCAUGuagCUGuuUGGCGCG- -5' |
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17089 | 5' | -53.6 | NC_004333.2 | + | 23220 | 0.7 | 0.509452 |
Target: 5'- -aCGGGCGauggcaccaACAUCGucCAGuCCGCGCg -3' miRNA: 3'- uaGCCCGCa--------UGUAGCu-GUUuGGCGCG- -5' |
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17089 | 5' | -53.6 | NC_004333.2 | + | 4939 | 0.71 | 0.467619 |
Target: 5'- gGUCaGcGGCGgcagcgGCAUCGGCAcGgCGCGCg -3' miRNA: 3'- -UAG-C-CCGCa-----UGUAGCUGUuUgGCGCG- -5' |
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17089 | 5' | -53.6 | NC_004333.2 | + | 25275 | 0.71 | 0.467619 |
Target: 5'- -gCGGGCGUcgACGUCGAg---UCGCGCa -3' miRNA: 3'- uaGCCCGCA--UGUAGCUguuuGGCGCG- -5' |
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17089 | 5' | -53.6 | NC_004333.2 | + | 30146 | 0.71 | 0.457437 |
Target: 5'- cGUCGGcGCuacgGCAUCGAC---CCGCGCu -3' miRNA: 3'- -UAGCC-CGca--UGUAGCUGuuuGGCGCG- -5' |
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17089 | 5' | -53.6 | NC_004333.2 | + | 28167 | 0.7 | 0.541827 |
Target: 5'- uUC-GGCGUGCcgcUCGACAcgaugaaccaGAUCGCGCg -3' miRNA: 3'- uAGcCCGCAUGu--AGCUGU----------UUGGCGCG- -5' |
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17089 | 5' | -53.6 | NC_004333.2 | + | 13068 | 0.7 | 0.541827 |
Target: 5'- -cCGGcGCGaACGUCGAUuugucGAugCGCGCc -3' miRNA: 3'- uaGCC-CGCaUGUAGCUG-----UUugGCGCG- -5' |
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17089 | 5' | -53.6 | NC_004333.2 | + | 11320 | 0.68 | 0.638617 |
Target: 5'- cAUUGGGcCGUcuggcagcacucgaGCGcCGGCAAggaGCCGCGCc -3' miRNA: 3'- -UAGCCC-GCA--------------UGUaGCUGUU---UGGCGCG- -5' |
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17089 | 5' | -53.6 | NC_004333.2 | + | 11669 | 0.68 | 0.63076 |
Target: 5'- -cCGGcGCGUuucaggauuuguACGUCGACAAucaGCGCa -3' miRNA: 3'- uaGCC-CGCA------------UGUAGCUGUUuggCGCG- -5' |
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17089 | 5' | -53.6 | NC_004333.2 | + | 17374 | 0.68 | 0.63076 |
Target: 5'- cUCGGGC--AUGUCGAgGAcGCUGCGCc -3' miRNA: 3'- uAGCCCGcaUGUAGCUgUU-UGGCGCG- -5' |
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17089 | 5' | -53.6 | NC_004333.2 | + | 26013 | 0.69 | 0.619537 |
Target: 5'- -aCuGGCcgccgGCAUCGAC--GCCGCGCg -3' miRNA: 3'- uaGcCCGca---UGUAGCUGuuUGGCGCG- -5' |
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17089 | 5' | -53.6 | NC_004333.2 | + | 5208 | 0.69 | 0.608325 |
Target: 5'- -aCGGGCGgcucgcccgugACGgaCGACAAuguGCUGCGCg -3' miRNA: 3'- uaGCCCGCa----------UGUa-GCUGUU---UGGCGCG- -5' |
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17089 | 5' | -53.6 | NC_004333.2 | + | 2302 | 0.69 | 0.597135 |
Target: 5'- cAUCGGuGCGUACGcgaacgCGGCGAACaacuacacgauCGCGUa -3' miRNA: 3'- -UAGCC-CGCAUGUa-----GCUGUUUG-----------GCGCG- -5' |
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17089 | 5' | -53.6 | NC_004333.2 | + | 9273 | 0.69 | 0.585976 |
Target: 5'- aGUCGGuGCGcACcgcgAUCGACAcuGCCGuCGCg -3' miRNA: 3'- -UAGCC-CGCaUG----UAGCUGUu-UGGC-GCG- -5' |
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17089 | 5' | -53.6 | NC_004333.2 | + | 25867 | 0.69 | 0.585976 |
Target: 5'- uAUC-GGCGUGCGcgCGugAuaaGAUCGCGCg -3' miRNA: 3'- -UAGcCCGCAUGUa-GCugU---UUGGCGCG- -5' |
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17089 | 5' | -53.6 | NC_004333.2 | + | 32935 | 0.69 | 0.585976 |
Target: 5'- --aGGGCuGgcgcaACAUCGaccgacucgaGCAGGCCGCGCu -3' miRNA: 3'- uagCCCG-Ca----UGUAGC----------UGUUUGGCGCG- -5' |
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17089 | 5' | -53.6 | NC_004333.2 | + | 9785 | 0.69 | 0.574857 |
Target: 5'- -aCGcGGCGUu--UCG-CGAACCGCGUg -3' miRNA: 3'- uaGC-CCGCAuguAGCuGUUUGGCGCG- -5' |
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17089 | 5' | -53.6 | NC_004333.2 | + | 37263 | 0.69 | 0.563787 |
Target: 5'- cUCGGcaccgGCGcGCGUCGugAGcggcgugucGCCGCGCu -3' miRNA: 3'- uAGCC-----CGCaUGUAGCugUU---------UGGCGCG- -5' |
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17089 | 5' | -53.6 | NC_004333.2 | + | 7509 | 0.7 | 0.552774 |
Target: 5'- cGUCGGGCcgucucGUGCAgcucUgGGC--GCCGCGCg -3' miRNA: 3'- -UAGCCCG------CAUGU----AgCUGuuUGGCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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