miRNA display CGI


Results 41 - 60 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17089 5' -53.6 NC_004333.2 + 41429 0.66 0.782877
Target:  5'- gGUCGGGCGcgUGC-UCGAgcgccacacguaCAcACuCGCGCg -3'
miRNA:   3'- -UAGCCCGC--AUGuAGCU------------GUuUG-GCGCG- -5'
17089 5' -53.6 NC_004333.2 + 25076 0.66 0.782877
Target:  5'- -cCGuGGCGaucaGCGU-GACAGGCgGCGCg -3'
miRNA:   3'- uaGC-CCGCa---UGUAgCUGUUUGgCGCG- -5'
17089 5' -53.6 NC_004333.2 + 2112 0.66 0.782877
Target:  5'- uAUCGcGCGgGCGUCGACGugaucgaugcGGCCGUGa -3'
miRNA:   3'- -UAGCcCGCaUGUAGCUGU----------UUGGCGCg -5'
17089 5' -53.6 NC_004333.2 + 37728 0.66 0.782877
Target:  5'- gGUCGGGCGcGCGcUCGAUGAAugucugauCCG-GCg -3'
miRNA:   3'- -UAGCCCGCaUGU-AGCUGUUU--------GGCgCG- -5'
17089 5' -53.6 NC_004333.2 + 7139 0.66 0.792912
Target:  5'- -gCGaGaCGUcaacaucauCAUCGACGAGCUGCGCg -3'
miRNA:   3'- uaGCcC-GCAu--------GUAGCUGUUUGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 26585 0.66 0.751842
Target:  5'- uGUCGGcGCGccggacuuCAUCGACGGAaauggCGUGCg -3'
miRNA:   3'- -UAGCC-CGCau------GUAGCUGUUUg----GCGCG- -5'
17089 5' -53.6 NC_004333.2 + 45346 0.66 0.751842
Target:  5'- uUCGGGaCGU-CGUUcGCGAGCCaagGCGCc -3'
miRNA:   3'- uAGCCC-GCAuGUAGcUGUUUGG---CGCG- -5'
17089 5' -53.6 NC_004333.2 + 19937 0.68 0.664394
Target:  5'- -gCGGGCGUA-AUCGGuCGcACuCGCGCc -3'
miRNA:   3'- uaGCCCGCAUgUAGCU-GUuUG-GCGCG- -5'
17089 5' -53.6 NC_004333.2 + 9450 0.68 0.664394
Target:  5'- -cCGGGCGccgaggACAaCGAgGAagaaggcccgacGCCGCGCg -3'
miRNA:   3'- uaGCCCGCa-----UGUaGCUgUU------------UGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 7315 0.67 0.686678
Target:  5'- cGUCaGGCGuUGCcgCGAgAAACCGCc- -3'
miRNA:   3'- -UAGcCCGC-AUGuaGCUgUUUGGCGcg -5'
17089 5' -53.6 NC_004333.2 + 43527 0.67 0.708744
Target:  5'- gAUUGcGGCGcGCAagCGcGCGAugCGCGCg -3'
miRNA:   3'- -UAGC-CCGCaUGUa-GC-UGUUugGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 3291 0.67 0.708744
Target:  5'- ---cGGCGU-CAUCGggGCGGGCgGCGCg -3'
miRNA:   3'- uagcCCGCAuGUAGC--UGUUUGgCGCG- -5'
17089 5' -53.6 NC_004333.2 + 41873 0.67 0.719666
Target:  5'- cGUCGGGCagcUugAcCGgaaACGGACUGCGCa -3'
miRNA:   3'- -UAGCCCGc--AugUaGC---UGUUUGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 47157 0.67 0.719666
Target:  5'- aGUCGGaGCG-GCG-CGAaAGAUCGCGCu -3'
miRNA:   3'- -UAGCC-CGCaUGUaGCUgUUUGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 34311 0.67 0.719666
Target:  5'- -aUGGGCGUcaagugcgaccgGCggCGACAAugUGCGa -3'
miRNA:   3'- uaGCCCGCA------------UGuaGCUGUUugGCGCg -5'
17089 5' -53.6 NC_004333.2 + 20026 0.67 0.730498
Target:  5'- aGUCGGGCaaaGCAcUCGACGGcggcucgccGCCcgGCGCg -3'
miRNA:   3'- -UAGCCCGca-UGU-AGCUGUU---------UGG--CGCG- -5'
17089 5' -53.6 NC_004333.2 + 12437 0.67 0.730498
Target:  5'- -gCGGGCGgGCGcuaCGGCGcccccGACCGuCGCg -3'
miRNA:   3'- uaGCCCGCaUGUa--GCUGU-----UUGGC-GCG- -5'
17089 5' -53.6 NC_004333.2 + 8294 0.67 0.730498
Target:  5'- -gCGGGCcgGCGUCauccuGCCGCGCa -3'
miRNA:   3'- uaGCCCGcaUGUAGcuguuUGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 8710 0.67 0.730498
Target:  5'- -cCGGGCGccGCGccgagcUCGACG--UCGCGCa -3'
miRNA:   3'- uaGCCCGCa-UGU------AGCUGUuuGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 31852 0.66 0.741227
Target:  5'- gAUCGGGCGcAUGUCGcACGAcaCGCGa -3'
miRNA:   3'- -UAGCCCGCaUGUAGC-UGUUugGCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.