Results 61 - 80 of 125 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17089 | 5' | -53.6 | NC_004333.2 | + | 7315 | 0.67 | 0.686678 |
Target: 5'- cGUCaGGCGuUGCcgCGAgAAACCGCc- -3' miRNA: 3'- -UAGcCCGC-AUGuaGCUgUUUGGCGcg -5' |
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17089 | 5' | -53.6 | NC_004333.2 | + | 43527 | 0.67 | 0.708744 |
Target: 5'- gAUUGcGGCGcGCAagCGcGCGAugCGCGCg -3' miRNA: 3'- -UAGC-CCGCaUGUa-GC-UGUUugGCGCG- -5' |
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17089 | 5' | -53.6 | NC_004333.2 | + | 8294 | 0.67 | 0.730498 |
Target: 5'- -gCGGGCcgGCGUCauccuGCCGCGCa -3' miRNA: 3'- uaGCCCGcaUGUAGcuguuUGGCGCG- -5' |
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17089 | 5' | -53.6 | NC_004333.2 | + | 12437 | 0.67 | 0.730498 |
Target: 5'- -gCGGGCGgGCGcuaCGGCGcccccGACCGuCGCg -3' miRNA: 3'- uaGCCCGCaUGUa--GCUGU-----UUGGC-GCG- -5' |
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17089 | 5' | -53.6 | NC_004333.2 | + | 20026 | 0.67 | 0.730498 |
Target: 5'- aGUCGGGCaaaGCAcUCGACGGcggcucgccGCCcgGCGCg -3' miRNA: 3'- -UAGCCCGca-UGU-AGCUGUU---------UGG--CGCG- -5' |
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17089 | 5' | -53.6 | NC_004333.2 | + | 34311 | 0.67 | 0.719666 |
Target: 5'- -aUGGGCGUcaagugcgaccgGCggCGACAAugUGCGa -3' miRNA: 3'- uaGCCCGCA------------UGuaGCUGUUugGCGCg -5' |
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17089 | 5' | -53.6 | NC_004333.2 | + | 47157 | 0.67 | 0.719666 |
Target: 5'- aGUCGGaGCG-GCG-CGAaAGAUCGCGCu -3' miRNA: 3'- -UAGCC-CGCaUGUaGCUgUUUGGCGCG- -5' |
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17089 | 5' | -53.6 | NC_004333.2 | + | 41873 | 0.67 | 0.719666 |
Target: 5'- cGUCGGGCagcUugAcCGgaaACGGACUGCGCa -3' miRNA: 3'- -UAGCCCGc--AugUaGC---UGUUUGGCGCG- -5' |
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17089 | 5' | -53.6 | NC_004333.2 | + | 3291 | 0.67 | 0.708744 |
Target: 5'- ---cGGCGU-CAUCGggGCGGGCgGCGCg -3' miRNA: 3'- uagcCCGCAuGUAGC--UGUUUGgCGCG- -5' |
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17089 | 5' | -53.6 | NC_004333.2 | + | 5595 | 0.72 | 0.447374 |
Target: 5'- cAUCGGGCaUGCGcaCGuuCAGGCCGUGCg -3' miRNA: 3'- -UAGCCCGcAUGUa-GCu-GUUUGGCGCG- -5' |
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17089 | 5' | -53.6 | NC_004333.2 | + | 29883 | 0.72 | 0.437436 |
Target: 5'- cGUCGGcgaaGCGcUGCG-CGAuCGGGCCGCGCg -3' miRNA: 3'- -UAGCC----CGC-AUGUaGCU-GUUUGGCGCG- -5' |
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17089 | 5' | -53.6 | NC_004333.2 | + | 47966 | 0.72 | 0.427626 |
Target: 5'- gGUCGucGGCGU-CAUCGGCGGugUGCGg -3' miRNA: 3'- -UAGC--CCGCAuGUAGCUGUUugGCGCg -5' |
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17089 | 5' | -53.6 | NC_004333.2 | + | 45301 | 0.72 | 0.417947 |
Target: 5'- cUCGaGGCGUucgagaaggGCAUCGACGGuuacaagcucGCCGCGa -3' miRNA: 3'- uAGC-CCGCA---------UGUAGCUGUU----------UGGCGCg -5' |
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17089 | 5' | -53.6 | NC_004333.2 | + | 907 | 0.73 | 0.384237 |
Target: 5'- --gGGGUGUugGUCGGCAuugcgcccucguagcGugcGCCGCGCu -3' miRNA: 3'- uagCCCGCAugUAGCUGU---------------U---UGGCGCG- -5' |
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17089 | 5' | -53.6 | NC_004333.2 | + | 10569 | 0.73 | 0.380604 |
Target: 5'- uAUCGGGC--GCAUCG-CAGGCgGUGCu -3' miRNA: 3'- -UAGCCCGcaUGUAGCuGUUUGgCGCG- -5' |
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17089 | 5' | -53.6 | NC_004333.2 | + | 25554 | 0.73 | 0.371623 |
Target: 5'- -gCGGGuCG-ACAUUGGCGAucaGCUGCGCa -3' miRNA: 3'- uaGCCC-GCaUGUAGCUGUU---UGGCGCG- -5' |
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17089 | 5' | -53.6 | NC_004333.2 | + | 13848 | 0.74 | 0.332202 |
Target: 5'- -aCGGGCGccGCGUCGAgcgcauugagcgcgcCGcGCCGCGCg -3' miRNA: 3'- uaGCCCGCa-UGUAGCU---------------GUuUGGCGCG- -5' |
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17089 | 5' | -53.6 | NC_004333.2 | + | 25767 | 0.75 | 0.297451 |
Target: 5'- -gCGGGaCGUugGUCGugGucAugCGCGCg -3' miRNA: 3'- uaGCCC-GCAugUAGCugU--UugGCGCG- -5' |
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17089 | 5' | -53.6 | NC_004333.2 | + | 17061 | 0.76 | 0.244193 |
Target: 5'- cUCGcGGUGUuccagccgcgccggaACAUCGGCGAACCGgGCc -3' miRNA: 3'- uAGC-CCGCA---------------UGUAGCUGUUUGGCgCG- -5' |
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17089 | 5' | -53.6 | NC_004333.2 | + | 26601 | 0.66 | 0.792912 |
Target: 5'- gGUCGGcGCGUuCA-CGACAAagcugGCgGCGUu -3' miRNA: 3'- -UAGCC-CGCAuGUaGCUGUU-----UGgCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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