Results 101 - 120 of 125 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17089 | 5' | -53.6 | NC_004333.2 | + | 45301 | 0.72 | 0.417947 |
Target: 5'- cUCGaGGCGUucgagaaggGCAUCGACGGuuacaagcucGCCGCGa -3' miRNA: 3'- uAGC-CCGCA---------UGUAGCUGUU----------UGGCGCg -5' |
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17089 | 5' | -53.6 | NC_004333.2 | + | 907 | 0.73 | 0.384237 |
Target: 5'- --gGGGUGUugGUCGGCAuugcgcccucguagcGugcGCCGCGCu -3' miRNA: 3'- uagCCCGCAugUAGCUGU---------------U---UGGCGCG- -5' |
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17089 | 5' | -53.6 | NC_004333.2 | + | 10569 | 0.73 | 0.380604 |
Target: 5'- uAUCGGGC--GCAUCG-CAGGCgGUGCu -3' miRNA: 3'- -UAGCCCGcaUGUAGCuGUUUGgCGCG- -5' |
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17089 | 5' | -53.6 | NC_004333.2 | + | 25554 | 0.73 | 0.371623 |
Target: 5'- -gCGGGuCG-ACAUUGGCGAucaGCUGCGCa -3' miRNA: 3'- uaGCCC-GCaUGUAGCUGUU---UGGCGCG- -5' |
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17089 | 5' | -53.6 | NC_004333.2 | + | 13848 | 0.74 | 0.332202 |
Target: 5'- -aCGGGCGccGCGUCGAgcgcauugagcgcgcCGcGCCGCGCg -3' miRNA: 3'- uaGCCCGCa-UGUAGCU---------------GUuUGGCGCG- -5' |
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17089 | 5' | -53.6 | NC_004333.2 | + | 25767 | 0.75 | 0.297451 |
Target: 5'- -gCGGGaCGUugGUCGugGucAugCGCGCg -3' miRNA: 3'- uaGCCC-GCAugUAGCugU--UugGCGCG- -5' |
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17089 | 5' | -53.6 | NC_004333.2 | + | 17061 | 0.76 | 0.244193 |
Target: 5'- cUCGcGGUGUuccagccgcgccggaACAUCGGCGAACCGgGCc -3' miRNA: 3'- uAGC-CCGCA---------------UGUAGCUGUUUGGCgCG- -5' |
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17089 | 5' | -53.6 | NC_004333.2 | + | 27190 | 0.72 | 0.447374 |
Target: 5'- -cCGaGGUGUGg--CGGCAGACCGUGCu -3' miRNA: 3'- uaGC-CCGCAUguaGCUGUUUGGCGCG- -5' |
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17089 | 5' | -53.6 | NC_004333.2 | + | 8980 | 0.71 | 0.498839 |
Target: 5'- -gUGGGcCGUGCG-CGGCGgcGACCGaCGCg -3' miRNA: 3'- uaGCCC-GCAUGUaGCUGU--UUGGC-GCG- -5' |
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17089 | 5' | -53.6 | NC_004333.2 | + | 24801 | 0.68 | 0.653199 |
Target: 5'- -gCGGGC--ACGuUCGGC-AGCUGCGCg -3' miRNA: 3'- uaGCCCGcaUGU-AGCUGuUUGGCGCG- -5' |
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17089 | 5' | -53.6 | NC_004333.2 | + | 3005 | 0.68 | 0.641984 |
Target: 5'- -cCGGcGCGUccGCcgCGACGuAgCGCGCg -3' miRNA: 3'- uaGCC-CGCA--UGuaGCUGUuUgGCGCG- -5' |
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17089 | 5' | -53.6 | NC_004333.2 | + | 29184 | 0.68 | 0.641984 |
Target: 5'- gGUCGGGCcgcUGCA-CGAac--CCGCGCa -3' miRNA: 3'- -UAGCCCGc--AUGUaGCUguuuGGCGCG- -5' |
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17089 | 5' | -53.6 | NC_004333.2 | + | 43431 | 0.68 | 0.63076 |
Target: 5'- cUCGGGuCGgGC--UGACGGACgCGCGCa -3' miRNA: 3'- uAGCCC-GCaUGuaGCUGUUUG-GCGCG- -5' |
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17089 | 5' | -53.6 | NC_004333.2 | + | 24107 | 0.68 | 0.63076 |
Target: 5'- --aGcGCGUugAUCGACGGACagucgcaGCGCg -3' miRNA: 3'- uagCcCGCAugUAGCUGUUUGg------CGCG- -5' |
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17089 | 5' | -53.6 | NC_004333.2 | + | 11346 | 0.69 | 0.597135 |
Target: 5'- -gCGGcGCGguuCGUCGuCAccuuGCCGCGCu -3' miRNA: 3'- uaGCC-CGCau-GUAGCuGUu---UGGCGCG- -5' |
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17089 | 5' | -53.6 | NC_004333.2 | + | 37425 | 0.69 | 0.579299 |
Target: 5'- -gCGcGGCGUGCAcguguacugcggcgUGACGAACgGCGCc -3' miRNA: 3'- uaGC-CCGCAUGUa-------------GCUGUUUGgCGCG- -5' |
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17089 | 5' | -53.6 | NC_004333.2 | + | 41712 | 0.69 | 0.579299 |
Target: 5'- uUCGGGCGgcacgGCGcgaucaacgaggagaUCGGCGcgggcGACuCGCGCg -3' miRNA: 3'- uAGCCCGCa----UGU---------------AGCUGU-----UUG-GCGCG- -5' |
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17089 | 5' | -53.6 | NC_004333.2 | + | 9604 | 0.7 | 0.509452 |
Target: 5'- -cCGGcGCG-GCAUCGGCcGGuuGCGCa -3' miRNA: 3'- uaGCC-CGCaUGUAGCUGuUUggCGCG- -5' |
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17089 | 5' | -53.6 | NC_004333.2 | + | 4029 | 0.7 | 0.509452 |
Target: 5'- aGUCGGGCcacCAcUCGAgAAACUGCGUg -3' miRNA: 3'- -UAGCCCGcauGU-AGCUgUUUGGCGCG- -5' |
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17089 | 5' | -53.6 | NC_004333.2 | + | 20881 | 0.71 | 0.498839 |
Target: 5'- -aUGGGCGg----CGACGAGCCcgGCGCa -3' miRNA: 3'- uaGCCCGCauguaGCUGUUUGG--CGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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