Results 121 - 125 of 125 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17089 | 5' | -53.6 | NC_004333.2 | + | 37425 | 0.69 | 0.579299 |
Target: 5'- -gCGcGGCGUGCAcguguacugcggcgUGACGAACgGCGCc -3' miRNA: 3'- uaGC-CCGCAUGUa-------------GCUGUUUGgCGCG- -5' |
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17089 | 5' | -53.6 | NC_004333.2 | + | 41712 | 0.69 | 0.579299 |
Target: 5'- uUCGGGCGgcacgGCGcgaucaacgaggagaUCGGCGcgggcGACuCGCGCg -3' miRNA: 3'- uAGCCCGCa----UGU---------------AGCUGU-----UUG-GCGCG- -5' |
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17089 | 5' | -53.6 | NC_004333.2 | + | 9604 | 0.7 | 0.509452 |
Target: 5'- -cCGGcGCG-GCAUCGGCcGGuuGCGCa -3' miRNA: 3'- uaGCC-CGCaUGUAGCUGuUUggCGCG- -5' |
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17089 | 5' | -53.6 | NC_004333.2 | + | 4029 | 0.7 | 0.509452 |
Target: 5'- aGUCGGGCcacCAcUCGAgAAACUGCGUg -3' miRNA: 3'- -UAGCCCGcauGU-AGCUgUUUGGCGCG- -5' |
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17089 | 5' | -53.6 | NC_004333.2 | + | 43530 | 0.79 | 0.156113 |
Target: 5'- uUCuGGCGUAUcUCGACGauGACCGCGCc -3' miRNA: 3'- uAGcCCGCAUGuAGCUGU--UUGGCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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