miRNA display CGI


Results 21 - 40 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17089 5' -53.6 NC_004333.2 + 22902 0.66 0.761287
Target:  5'- -cCGGGCGUaucgcucACGUUcACGAGCgacaGCGCg -3'
miRNA:   3'- uaGCCCGCA-------UGUAGcUGUUUGg---CGCG- -5'
17089 5' -53.6 NC_004333.2 + 5194 0.66 0.751842
Target:  5'- cAUCGccugcaGGCGcgGCGUCGGC--ACCGuCGCa -3'
miRNA:   3'- -UAGC------CCGCa-UGUAGCUGuuUGGC-GCG- -5'
17089 5' -53.6 NC_004333.2 + 22023 0.66 0.751842
Target:  5'- -gCGGGCGUuuucucgacGCAgaUCacgcgggcgGACAGAUCGUGCa -3'
miRNA:   3'- uaGCCCGCA---------UGU--AG---------CUGUUUGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 45346 0.66 0.751842
Target:  5'- uUCGGGaCGU-CGUUcGCGAGCCaagGCGCc -3'
miRNA:   3'- uAGCCC-GCAuGUAGcUGUUUGG---CGCG- -5'
17089 5' -53.6 NC_004333.2 + 19718 0.66 0.751842
Target:  5'- -cCGuGGCGaGCuGUUGACGgccagcgucGGCCGCGCu -3'
miRNA:   3'- uaGC-CCGCaUG-UAGCUGU---------UUGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 26585 0.66 0.751842
Target:  5'- uGUCGGcGCGccggacuuCAUCGACGGAaauggCGUGCg -3'
miRNA:   3'- -UAGCC-CGCau------GUAGCUGUUUg----GCGCG- -5'
17089 5' -53.6 NC_004333.2 + 25305 0.66 0.741227
Target:  5'- -cCGGGCcgACGcCGGCGAcuGCCGCGa -3'
miRNA:   3'- uaGCCCGcaUGUaGCUGUU--UGGCGCg -5'
17089 5' -53.6 NC_004333.2 + 41400 0.66 0.741227
Target:  5'- uUCGcGGUGaACAUCGA---GCaCGCGCa -3'
miRNA:   3'- uAGC-CCGCaUGUAGCUguuUG-GCGCG- -5'
17089 5' -53.6 NC_004333.2 + 21022 0.66 0.741227
Target:  5'- -aCGGGCGa----CGAaguGGCCGCGCa -3'
miRNA:   3'- uaGCCCGCauguaGCUgu-UUGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 32098 0.66 0.741227
Target:  5'- cGUCGGcGCGUuCAgugaCGGCAGuuCCGaCGCg -3'
miRNA:   3'- -UAGCC-CGCAuGUa---GCUGUUu-GGC-GCG- -5'
17089 5' -53.6 NC_004333.2 + 31852 0.66 0.741227
Target:  5'- gAUCGGGCGcAUGUCGcACGAcaCGCGa -3'
miRNA:   3'- -UAGCCCGCaUGUAGC-UGUUugGCGCg -5'
17089 5' -53.6 NC_004333.2 + 20178 0.66 0.741227
Target:  5'- cUCGGGCGcACAcaagaaggCGGCAGuaaugggcgcgGCuCGCGCu -3'
miRNA:   3'- uAGCCCGCaUGUa-------GCUGUU-----------UG-GCGCG- -5'
17089 5' -53.6 NC_004333.2 + 41290 0.66 0.741227
Target:  5'- --aGGGCGgcgACuUCGACGAgGCCGaGCu -3'
miRNA:   3'- uagCCCGCa--UGuAGCUGUU-UGGCgCG- -5'
17089 5' -53.6 NC_004333.2 + 21987 0.66 0.740159
Target:  5'- -gCGGGcCGUuuucuuuGCGUCGGCGcgAAUCaGCGCg -3'
miRNA:   3'- uaGCCC-GCA-------UGUAGCUGU--UUGG-CGCG- -5'
17089 5' -53.6 NC_004333.2 + 1627 0.67 0.734802
Target:  5'- gGUCGaauGCGU-CGUCGGCGGcguagcccugaaugcGCUGCGCg -3'
miRNA:   3'- -UAGCc--CGCAuGUAGCUGUU---------------UGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 12437 0.67 0.730498
Target:  5'- -gCGGGCGgGCGcuaCGGCGcccccGACCGuCGCg -3'
miRNA:   3'- uaGCCCGCaUGUa--GCUGU-----UUGGC-GCG- -5'
17089 5' -53.6 NC_004333.2 + 20026 0.67 0.730498
Target:  5'- aGUCGGGCaaaGCAcUCGACGGcggcucgccGCCcgGCGCg -3'
miRNA:   3'- -UAGCCCGca-UGU-AGCUGUU---------UGG--CGCG- -5'
17089 5' -53.6 NC_004333.2 + 47626 0.67 0.730498
Target:  5'- -aUGGGCG-GCAcguUCGAU---CCGCGCg -3'
miRNA:   3'- uaGCCCGCaUGU---AGCUGuuuGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 8294 0.67 0.730498
Target:  5'- -gCGGGCcgGCGUCauccuGCCGCGCa -3'
miRNA:   3'- uaGCCCGcaUGUAGcuguuUGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 25445 0.67 0.730498
Target:  5'- -cCGGGCGUGCcgguuacgaCGACAcccggGAUCGuCGCg -3'
miRNA:   3'- uaGCCCGCAUGua-------GCUGU-----UUGGC-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.