miRNA display CGI


Results 1 - 20 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17090 3' -51.7 NC_004333.2 + 28664 0.66 0.869903
Target:  5'- aUCGCGGUCgcagaauuccggugcGUGCUGcugccagaucGCGAGCaGCACGa -3'
miRNA:   3'- -AGCGUCAG---------------UACGGU----------UGUUUGgCGUGC- -5'
17090 3' -51.7 NC_004333.2 + 10214 0.66 0.867418
Target:  5'- aUCGCGGUCGcgaaguggucggcuaUGCCGACcugggccucgauccGAAUCGCGu- -3'
miRNA:   3'- -AGCGUCAGU---------------ACGGUUG--------------UUUGGCGUgc -5'
17090 3' -51.7 NC_004333.2 + 44816 0.66 0.866584
Target:  5'- cCGuCGGUCAgguagGCCAuuucguaguCGAGCUGCGCc -3'
miRNA:   3'- aGC-GUCAGUa----CGGUu--------GUUUGGCGUGc -5'
17090 3' -51.7 NC_004333.2 + 20473 0.66 0.866584
Target:  5'- aCGCAGccgguuagCGUcCCGGCGGcuGCCGCGCa -3'
miRNA:   3'- aGCGUCa-------GUAcGGUUGUU--UGGCGUGc -5'
17090 3' -51.7 NC_004333.2 + 20407 0.66 0.866584
Target:  5'- gUCGCGGUacccgucggCAcgGCCGGCAAGCCugGCAa- -3'
miRNA:   3'- -AGCGUCA---------GUa-CGGUUGUUUGG--CGUgc -5'
17090 3' -51.7 NC_004333.2 + 25735 0.66 0.866584
Target:  5'- cCGCGuUCGcgacgGCCGGCAagacgcuuucGACCGCGCu -3'
miRNA:   3'- aGCGUcAGUa----CGGUUGU----------UUGGCGUGc -5'
17090 3' -51.7 NC_004333.2 + 17790 0.66 0.866584
Target:  5'- gUCGgcCAGUCccUGUCGA-AGGCCGCGCGg -3'
miRNA:   3'- -AGC--GUCAGu-ACGGUUgUUUGGCGUGC- -5'
17090 3' -51.7 NC_004333.2 + 17073 0.66 0.866584
Target:  5'- gCGCGGcgacggcgUAUGCC-GCGAGuuGCGCGu -3'
miRNA:   3'- aGCGUCa-------GUACGGuUGUUUggCGUGC- -5'
17090 3' -51.7 NC_004333.2 + 13716 0.66 0.866584
Target:  5'- gCGCAG-C-UGCCcgaguACCGCGCGa -3'
miRNA:   3'- aGCGUCaGuACGGuuguuUGGCGUGC- -5'
17090 3' -51.7 NC_004333.2 + 2009 0.66 0.858104
Target:  5'- gCGCGGaUgAUGcCCGACGucacGGCCGCAuCGa -3'
miRNA:   3'- aGCGUC-AgUAC-GGUUGU----UUGGCGU-GC- -5'
17090 3' -51.7 NC_004333.2 + 9407 0.66 0.858104
Target:  5'- uUCGUcGUCuucgcUGCCcuGCGGGCUGCGCa -3'
miRNA:   3'- -AGCGuCAGu----ACGGu-UGUUUGGCGUGc -5'
17090 3' -51.7 NC_004333.2 + 5519 0.66 0.858104
Target:  5'- uUCGCggggauauaGGUCAUGCCGuggccgGCGAcgGCUugGCGCGa -3'
miRNA:   3'- -AGCG---------UCAGUACGGU------UGUU--UGG--CGUGC- -5'
17090 3' -51.7 NC_004333.2 + 2923 0.66 0.858104
Target:  5'- -aGCGGUCGUgaccGUCAACGuGCCGCu-- -3'
miRNA:   3'- agCGUCAGUA----CGGUUGUuUGGCGugc -5'
17090 3' -51.7 NC_004333.2 + 23398 0.66 0.858104
Target:  5'- -gGCGGUCAcGCCGuACugguAGCCcgGCACGu -3'
miRNA:   3'- agCGUCAGUaCGGU-UGu---UUGG--CGUGC- -5'
17090 3' -51.7 NC_004333.2 + 39755 0.66 0.858104
Target:  5'- gCGCAGgCAgGCCGACcagGAAgCGCGCc -3'
miRNA:   3'- aGCGUCaGUaCGGUUG---UUUgGCGUGc -5'
17090 3' -51.7 NC_004333.2 + 47269 0.66 0.858104
Target:  5'- gUCGCGGcgacUUGUGCCucu--GCUGCGCGg -3'
miRNA:   3'- -AGCGUC----AGUACGGuuguuUGGCGUGC- -5'
17090 3' -51.7 NC_004333.2 + 11307 0.66 0.849368
Target:  5'- -gGCAGcacUCGagcGCCGGCAAggaGCCGCGCc -3'
miRNA:   3'- agCGUC---AGUa--CGGUUGUU---UGGCGUGc -5'
17090 3' -51.7 NC_004333.2 + 17153 0.66 0.849368
Target:  5'- gCGCgaggaAGUCGUGCgcguCGACAAgGCCGCuGCGa -3'
miRNA:   3'- aGCG-----UCAGUACG----GUUGUU-UGGCG-UGC- -5'
17090 3' -51.7 NC_004333.2 + 11349 0.66 0.849368
Target:  5'- gCGCGGuUCGUcGUCAcCuuGCCGCGCu -3'
miRNA:   3'- aGCGUC-AGUA-CGGUuGuuUGGCGUGc -5'
17090 3' -51.7 NC_004333.2 + 12565 0.66 0.849368
Target:  5'- -gGCccgUAUGCCGGCAAGCUGgACGc -3'
miRNA:   3'- agCGucaGUACGGUUGUUUGGCgUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.