miRNA display CGI


Results 1 - 20 of 67 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17091 3' -55.2 NC_004333.2 + 37511 0.66 0.703651
Target:  5'- gGCGccGUUCGucaCGCCgcaguACACGUGCACGc -3'
miRNA:   3'- -CGCa-CGAGCuc-GCGG-----UGUGCAUGUGU- -5'
17091 3' -55.2 NC_004333.2 + 20853 0.66 0.703651
Target:  5'- cGCGcauccUGCUCGAaCGCCACAagGUAUggGCGg -3'
miRNA:   3'- -CGC-----ACGAGCUcGCGGUGUg-CAUG--UGU- -5'
17091 3' -55.2 NC_004333.2 + 46780 0.66 0.703651
Target:  5'- cGCGcUGCUCGGcacguccaagcGUGCCGuCuauacCGUGCGCAa -3'
miRNA:   3'- -CGC-ACGAGCU-----------CGCGGU-Gu----GCAUGUGU- -5'
17091 3' -55.2 NC_004333.2 + 9758 0.66 0.692737
Target:  5'- uGCGcGCccgucgucaaCGAGCGCCACAUGguugcCACGg -3'
miRNA:   3'- -CGCaCGa---------GCUCGCGGUGUGCau---GUGU- -5'
17091 3' -55.2 NC_004333.2 + 13358 0.66 0.692737
Target:  5'- -gGUGUaCGGGCGCgGCACGaGCGg- -3'
miRNA:   3'- cgCACGaGCUCGCGgUGUGCaUGUgu -5'
17091 3' -55.2 NC_004333.2 + 25515 0.66 0.659682
Target:  5'- uGCG-GC-CGAGCGCgucUugGUACGCGc -3'
miRNA:   3'- -CGCaCGaGCUCGCGgu-GugCAUGUGU- -5'
17091 3' -55.2 NC_004333.2 + 41470 0.66 0.659682
Target:  5'- cGCGUGCUCGAuguucaccGCGaaCCACAUgaaGUGCuuGCGg -3'
miRNA:   3'- -CGCACGAGCU--------CGC--GGUGUG---CAUG--UGU- -5'
17091 3' -55.2 NC_004333.2 + 2264 0.66 0.659682
Target:  5'- --uUGUUCGAGCGCaGCGCGUuuGCc -3'
miRNA:   3'- cgcACGAGCUCGCGgUGUGCAugUGu -5'
17091 3' -55.2 NC_004333.2 + 30840 0.66 0.659682
Target:  5'- cGCGUcguagaacGCgUCGAGCGCCugGCGg----- -3'
miRNA:   3'- -CGCA--------CG-AGCUCGCGGugUGCaugugu -5'
17091 3' -55.2 NC_004333.2 + 37199 0.66 0.659682
Target:  5'- uCGUGCggcgUGAGCGCUucgaGCACGcccCGCAg -3'
miRNA:   3'- cGCACGa---GCUCGCGG----UGUGCau-GUGU- -5'
17091 3' -55.2 NC_004333.2 + 35497 0.67 0.648598
Target:  5'- aGCGUGCcgccugCGAGCGgCACGuaaaGUGCGa- -3'
miRNA:   3'- -CGCACGa-----GCUCGCgGUGUg---CAUGUgu -5'
17091 3' -55.2 NC_004333.2 + 39180 0.67 0.648598
Target:  5'- cCGUGCUgCGcGCGCUGCAcCGgcaGCACGg -3'
miRNA:   3'- cGCACGA-GCuCGCGGUGU-GCa--UGUGU- -5'
17091 3' -55.2 NC_004333.2 + 28754 0.67 0.637497
Target:  5'- --cUGCgCGAGCGCCGCGuCGaccGCGCGg -3'
miRNA:   3'- cgcACGaGCUCGCGGUGU-GCa--UGUGU- -5'
17091 3' -55.2 NC_004333.2 + 26924 0.67 0.637497
Target:  5'- cGCaGUGUUugcCGAGCGCgACGCGacaGCACu -3'
miRNA:   3'- -CG-CACGA---GCUCGCGgUGUGCa--UGUGu -5'
17091 3' -55.2 NC_004333.2 + 21190 0.67 0.637497
Target:  5'- gGCcUGCUCGGG-GCauUACGUGCGCAu -3'
miRNA:   3'- -CGcACGAGCUCgCGguGUGCAUGUGU- -5'
17091 3' -55.2 NC_004333.2 + 13648 0.67 0.626392
Target:  5'- cGCGguaCUCGGGCaGCUGCGCGagcaGCACGa -3'
miRNA:   3'- -CGCac-GAGCUCG-CGGUGUGCa---UGUGU- -5'
17091 3' -55.2 NC_004333.2 + 935 0.67 0.615292
Target:  5'- aGCGUGCgcc-GCGCUAUGCGUuuGCAu -3'
miRNA:   3'- -CGCACGagcuCGCGGUGUGCAugUGU- -5'
17091 3' -55.2 NC_004333.2 + 44915 0.67 0.615292
Target:  5'- uGCGU-CUCGAuGCGUCGCGCGcGC-CGa -3'
miRNA:   3'- -CGCAcGAGCU-CGCGGUGUGCaUGuGU- -5'
17091 3' -55.2 NC_004333.2 + 37717 0.67 0.615292
Target:  5'- gGCcUGCUCGAugucggcaaGCuGCCGCGCcUGCGCGa -3'
miRNA:   3'- -CGcACGAGCU---------CG-CGGUGUGcAUGUGU- -5'
17091 3' -55.2 NC_004333.2 + 10904 0.67 0.615292
Target:  5'- aGCGUaCUUGcGGcCGCUcCACGUGCGCAa -3'
miRNA:   3'- -CGCAcGAGC-UC-GCGGuGUGCAUGUGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.