miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17091 5' -62 NC_004333.2 + 29978 0.66 0.356238
Target:  5'- cCGCGcugCCAcCG-GCGCCGaGcGCGAGCa -3'
miRNA:   3'- -GUGCa--GGUaGCgCGCGGC-C-CGCUCGa -5'
17091 5' -62 NC_004333.2 + 21018 0.66 0.35542
Target:  5'- uGCGUCCGgcccCGUGgcguagcCGCCGGGCGucgGGUUg -3'
miRNA:   3'- gUGCAGGUa---GCGC-------GCGGCCCGC---UCGA- -5'
17091 5' -62 NC_004333.2 + 18796 0.66 0.348117
Target:  5'- cCGCGcUUAUCGCGCgGCCgcaGGGCGcguGCUg -3'
miRNA:   3'- -GUGCaGGUAGCGCG-CGG---CCCGCu--CGA- -5'
17091 5' -62 NC_004333.2 + 21222 0.66 0.34013
Target:  5'- gGCGgCCGUCGCGCGCaucuGGaaCGGGCc -3'
miRNA:   3'- gUGCaGGUAGCGCGCGg---CCc-GCUCGa -5'
17091 5' -62 NC_004333.2 + 47457 0.67 0.316971
Target:  5'- gCGCGUCgGUCG-GCGCuuucguuucauCGGGCG-GCg -3'
miRNA:   3'- -GUGCAGgUAGCgCGCG-----------GCCCGCuCGa -5'
17091 5' -62 NC_004333.2 + 5010 0.67 0.30952
Target:  5'- aCACGgugccuUCCGUCGCGCuugacaggcgGCCaGGCGgccGGCUg -3'
miRNA:   3'- -GUGC------AGGUAGCGCG----------CGGcCCGC---UCGA- -5'
17091 5' -62 NC_004333.2 + 33446 0.67 0.307311
Target:  5'- --aGUCCGgcagcauuggcagcgGCGCGCCGGGCGAu-- -3'
miRNA:   3'- gugCAGGUag-------------CGCGCGGCCCGCUcga -5'
17091 5' -62 NC_004333.2 + 43501 0.67 0.302203
Target:  5'- gCGCGUCCGUCagcccgacccgaGCGUcugccuGCgCGGGCG-GCUg -3'
miRNA:   3'- -GUGCAGGUAG------------CGCG------CG-GCCCGCuCGA- -5'
17091 5' -62 NC_004333.2 + 2014 0.67 0.287971
Target:  5'- gGCGgCC--CGCGuCGCCGGuGCGGGCc -3'
miRNA:   3'- gUGCaGGuaGCGC-GCGGCC-CGCUCGa -5'
17091 5' -62 NC_004333.2 + 24371 0.68 0.267619
Target:  5'- uCGCGgcuguUCCAggUCGCGCagucGCCGGGCGAc-- -3'
miRNA:   3'- -GUGC-----AGGU--AGCGCG----CGGCCCGCUcga -5'
17091 5' -62 NC_004333.2 + 37184 0.68 0.267619
Target:  5'- aCACG-CCGcucacgaCGCGCGCCGGuGcCGAGUUc -3'
miRNA:   3'- -GUGCaGGUa------GCGCGCGGCC-C-GCUCGA- -5'
17091 5' -62 NC_004333.2 + 3075 0.68 0.261098
Target:  5'- cUACGUCgCggCGgaCGCGCC-GGCGAGCg -3'
miRNA:   3'- -GUGCAG-GuaGC--GCGCGGcCCGCUCGa -5'
17091 5' -62 NC_004333.2 + 13638 0.69 0.236304
Target:  5'- -uCGUgCAUCGCGCGguacUCGGGC-AGCUg -3'
miRNA:   3'- guGCAgGUAGCGCGC----GGCCCGcUCGA- -5'
17091 5' -62 NC_004333.2 + 37429 0.7 0.202842
Target:  5'- aCGCGgugCaCGUCGCGUaGCCaGGGCGAcGCa -3'
miRNA:   3'- -GUGCa--G-GUAGCGCG-CGG-CCCGCU-CGa -5'
17091 5' -62 NC_004333.2 + 8173 0.7 0.192637
Target:  5'- cCGCGUCCAUCGCGUaCUcaGUGAGCg -3'
miRNA:   3'- -GUGCAGGUAGCGCGcGGccCGCUCGa -5'
17091 5' -62 NC_004333.2 + 20955 0.7 0.182885
Target:  5'- cCACGggCCGgacgcaaaCGCGCGCggcgCGGGCGAGUg -3'
miRNA:   3'- -GUGCa-GGUa-------GCGCGCG----GCCCGCUCGa -5'
17091 5' -62 NC_004333.2 + 40101 0.71 0.164684
Target:  5'- gGCGUCCG-CGCcgugGCGCCGcGCGAGUUc -3'
miRNA:   3'- gUGCAGGUaGCG----CGCGGCcCGCUCGA- -5'
17091 5' -62 NC_004333.2 + 12488 0.71 0.152522
Target:  5'- cUACGUCCAgcgcuuggccgaaggCggcgacacugGCGCGCCGGGCgGGGCg -3'
miRNA:   3'- -GUGCAGGUa--------------G----------CGCGCGGCCCG-CUCGa -5'
17091 5' -62 NC_004333.2 + 10552 0.72 0.143846
Target:  5'- gACGgCCAUCGCGCGUuuauCGGGCGcaucgcaGGCg -3'
miRNA:   3'- gUGCaGGUAGCGCGCG----GCCCGC-------UCGa -5'
17091 5' -62 NC_004333.2 + 41886 0.72 0.140428
Target:  5'- gGCG-CCGUCGUGcCGUCGGGC-AGCUu -3'
miRNA:   3'- gUGCaGGUAGCGC-GCGGCCCGcUCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.