Results 21 - 28 of 28 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 17091 | 5' | -62 | NC_004333.2 | + | 3290 | 0.72 | 0.140428 |
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Target: 5'- gGCGU-CAUCggggcgggcgGCGCGCCGGGCcGGCUc -3' miRNA: 3'- gUGCAgGUAG----------CGCGCGGCCCGcUCGA- -5' |
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| 17091 | 5' | -62 | NC_004333.2 | + | 38371 | 0.72 | 0.133099 |
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Target: 5'- aCGCG-CUGUCGCGUGUCGGGUGcGCc -3' miRNA: 3'- -GUGCaGGUAGCGCGCGGCCCGCuCGa -5' |
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| 17091 | 5' | -62 | NC_004333.2 | + | 19916 | 0.72 | 0.129568 |
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Target: 5'- -cCGUCCGcaUCaucgacgacgaGCGCGCCGGGCG-GCg -3' miRNA: 3'- guGCAGGU--AG-----------CGCGCGGCCCGCuCGa -5' |
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| 17091 | 5' | -62 | NC_004333.2 | + | 41746 | 0.72 | 0.125783 |
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Target: 5'- gCGCGggCGacUCGCGCGCCGGGCuaugggucugcacGAGCg -3' miRNA: 3'- -GUGCagGU--AGCGCGCGGCCCG-------------CUCGa -5' |
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| 17091 | 5' | -62 | NC_004333.2 | + | 11692 | 0.75 | 0.083714 |
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Target: 5'- aCAUaUCCGUCGacgcaGCGCCGGGCG-GCg -3' miRNA: 3'- -GUGcAGGUAGCg----CGCGGCCCGCuCGa -5' |
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| 17091 | 5' | -62 | NC_004333.2 | + | 8950 | 0.75 | 0.079208 |
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Target: 5'- gCGCuGUCCAUCGCGUGCgCGGGCuggaucguGGGCc -3' miRNA: 3'- -GUG-CAGGUAGCGCGCG-GCCCG--------CUCGa -5' |
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| 17091 | 5' | -62 | NC_004333.2 | + | 18568 | 0.78 | 0.049257 |
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Target: 5'- aGCGUCCGUCgGCGUGCCGgcaacGGCGGGUa -3' miRNA: 3'- gUGCAGGUAG-CGCGCGGC-----CCGCUCGa -5' |
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| 17091 | 5' | -62 | NC_004333.2 | + | 41387 | 1.06 | 0.000342 |
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Target: 5'- uCACGUCCAUCGCGCGCCGGGCGAGCUc -3' miRNA: 3'- -GUGCAGGUAGCGCGCGGCCCGCUCGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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