Results 1 - 20 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17091 | 5' | -62 | NC_004333.2 | + | 47457 | 0.67 | 0.316971 |
Target: 5'- gCGCGUCgGUCG-GCGCuuucguuucauCGGGCG-GCg -3' miRNA: 3'- -GUGCAGgUAGCgCGCG-----------GCCCGCuCGa -5' |
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17091 | 5' | -62 | NC_004333.2 | + | 43501 | 0.67 | 0.302203 |
Target: 5'- gCGCGUCCGUCagcccgacccgaGCGUcugccuGCgCGGGCG-GCUg -3' miRNA: 3'- -GUGCAGGUAG------------CGCG------CG-GCCCGCuCGA- -5' |
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17091 | 5' | -62 | NC_004333.2 | + | 41886 | 0.72 | 0.140428 |
Target: 5'- gGCG-CCGUCGUGcCGUCGGGC-AGCUu -3' miRNA: 3'- gUGCaGGUAGCGC-GCGGCCCGcUCGA- -5' |
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17091 | 5' | -62 | NC_004333.2 | + | 41746 | 0.72 | 0.125783 |
Target: 5'- gCGCGggCGacUCGCGCGCCGGGCuaugggucugcacGAGCg -3' miRNA: 3'- -GUGCagGU--AGCGCGCGGCCCG-------------CUCGa -5' |
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17091 | 5' | -62 | NC_004333.2 | + | 41387 | 1.06 | 0.000342 |
Target: 5'- uCACGUCCAUCGCGCGCCGGGCGAGCUc -3' miRNA: 3'- -GUGCAGGUAGCGCGCGGCCCGCUCGA- -5' |
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17091 | 5' | -62 | NC_004333.2 | + | 40101 | 0.71 | 0.164684 |
Target: 5'- gGCGUCCG-CGCcgugGCGCCGcGCGAGUUc -3' miRNA: 3'- gUGCAGGUaGCG----CGCGGCcCGCUCGA- -5' |
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17091 | 5' | -62 | NC_004333.2 | + | 38371 | 0.72 | 0.133099 |
Target: 5'- aCGCG-CUGUCGCGUGUCGGGUGcGCc -3' miRNA: 3'- -GUGCaGGUAGCGCGCGGCCCGCuCGa -5' |
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17091 | 5' | -62 | NC_004333.2 | + | 37429 | 0.7 | 0.202842 |
Target: 5'- aCGCGgugCaCGUCGCGUaGCCaGGGCGAcGCa -3' miRNA: 3'- -GUGCa--G-GUAGCGCG-CGG-CCCGCU-CGa -5' |
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17091 | 5' | -62 | NC_004333.2 | + | 37184 | 0.68 | 0.267619 |
Target: 5'- aCACG-CCGcucacgaCGCGCGCCGGuGcCGAGUUc -3' miRNA: 3'- -GUGCaGGUa------GCGCGCGGCC-C-GCUCGA- -5' |
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17091 | 5' | -62 | NC_004333.2 | + | 33446 | 0.67 | 0.307311 |
Target: 5'- --aGUCCGgcagcauuggcagcgGCGCGCCGGGCGAu-- -3' miRNA: 3'- gugCAGGUag-------------CGCGCGGCCCGCUcga -5' |
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17091 | 5' | -62 | NC_004333.2 | + | 29978 | 0.66 | 0.356238 |
Target: 5'- cCGCGcugCCAcCG-GCGCCGaGcGCGAGCa -3' miRNA: 3'- -GUGCa--GGUaGCgCGCGGC-C-CGCUCGa -5' |
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17091 | 5' | -62 | NC_004333.2 | + | 24371 | 0.68 | 0.267619 |
Target: 5'- uCGCGgcuguUCCAggUCGCGCagucGCCGGGCGAc-- -3' miRNA: 3'- -GUGC-----AGGU--AGCGCG----CGGCCCGCUcga -5' |
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17091 | 5' | -62 | NC_004333.2 | + | 21222 | 0.66 | 0.34013 |
Target: 5'- gGCGgCCGUCGCGCGCaucuGGaaCGGGCc -3' miRNA: 3'- gUGCaGGUAGCGCGCGg---CCc-GCUCGa -5' |
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17091 | 5' | -62 | NC_004333.2 | + | 21018 | 0.66 | 0.35542 |
Target: 5'- uGCGUCCGgcccCGUGgcguagcCGCCGGGCGucgGGUUg -3' miRNA: 3'- gUGCAGGUa---GCGC-------GCGGCCCGC---UCGA- -5' |
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17091 | 5' | -62 | NC_004333.2 | + | 20955 | 0.7 | 0.182885 |
Target: 5'- cCACGggCCGgacgcaaaCGCGCGCggcgCGGGCGAGUg -3' miRNA: 3'- -GUGCa-GGUa-------GCGCGCG----GCCCGCUCGa -5' |
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17091 | 5' | -62 | NC_004333.2 | + | 19916 | 0.72 | 0.129568 |
Target: 5'- -cCGUCCGcaUCaucgacgacgaGCGCGCCGGGCG-GCg -3' miRNA: 3'- guGCAGGU--AG-----------CGCGCGGCCCGCuCGa -5' |
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17091 | 5' | -62 | NC_004333.2 | + | 18796 | 0.66 | 0.348117 |
Target: 5'- cCGCGcUUAUCGCGCgGCCgcaGGGCGcguGCUg -3' miRNA: 3'- -GUGCaGGUAGCGCG-CGG---CCCGCu--CGA- -5' |
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17091 | 5' | -62 | NC_004333.2 | + | 18568 | 0.78 | 0.049257 |
Target: 5'- aGCGUCCGUCgGCGUGCCGgcaacGGCGGGUa -3' miRNA: 3'- gUGCAGGUAG-CGCGCGGC-----CCGCUCGa -5' |
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17091 | 5' | -62 | NC_004333.2 | + | 13638 | 0.69 | 0.236304 |
Target: 5'- -uCGUgCAUCGCGCGguacUCGGGC-AGCUg -3' miRNA: 3'- guGCAgGUAGCGCGC----GGCCCGcUCGA- -5' |
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17091 | 5' | -62 | NC_004333.2 | + | 12488 | 0.71 | 0.152522 |
Target: 5'- cUACGUCCAgcgcuuggccgaaggCggcgacacugGCGCGCCGGGCgGGGCg -3' miRNA: 3'- -GUGCAGGUa--------------G----------CGCGCGGCCCG-CUCGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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