Results 21 - 28 of 28 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
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R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 17091 | 5' | -62 | NC_004333.2 | + | 11692 | 0.75 | 0.083714 |
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Target: 5'- aCAUaUCCGUCGacgcaGCGCCGGGCG-GCg -3' miRNA: 3'- -GUGcAGGUAGCg----CGCGGCCCGCuCGa -5' |
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| 17091 | 5' | -62 | NC_004333.2 | + | 10552 | 0.72 | 0.143846 |
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Target: 5'- gACGgCCAUCGCGCGUuuauCGGGCGcaucgcaGGCg -3' miRNA: 3'- gUGCaGGUAGCGCGCG----GCCCGC-------UCGa -5' |
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| 17091 | 5' | -62 | NC_004333.2 | + | 8950 | 0.75 | 0.079208 |
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Target: 5'- gCGCuGUCCAUCGCGUGCgCGGGCuggaucguGGGCc -3' miRNA: 3'- -GUG-CAGGUAGCGCGCG-GCCCG--------CUCGa -5' |
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| 17091 | 5' | -62 | NC_004333.2 | + | 8173 | 0.7 | 0.192637 |
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Target: 5'- cCGCGUCCAUCGCGUaCUcaGUGAGCg -3' miRNA: 3'- -GUGCAGGUAGCGCGcGGccCGCUCGa -5' |
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| 17091 | 5' | -62 | NC_004333.2 | + | 5010 | 0.67 | 0.30952 |
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Target: 5'- aCACGgugccuUCCGUCGCGCuugacaggcgGCCaGGCGgccGGCUg -3' miRNA: 3'- -GUGC------AGGUAGCGCG----------CGGcCCGC---UCGA- -5' |
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| 17091 | 5' | -62 | NC_004333.2 | + | 3290 | 0.72 | 0.140428 |
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Target: 5'- gGCGU-CAUCggggcgggcgGCGCGCCGGGCcGGCUc -3' miRNA: 3'- gUGCAgGUAG----------CGCGCGGCCCGcUCGA- -5' |
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| 17091 | 5' | -62 | NC_004333.2 | + | 3075 | 0.68 | 0.261098 |
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Target: 5'- cUACGUCgCggCGgaCGCGCC-GGCGAGCg -3' miRNA: 3'- -GUGCAG-GuaGC--GCGCGGcCCGCUCGa -5' |
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| 17091 | 5' | -62 | NC_004333.2 | + | 2014 | 0.67 | 0.287971 |
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Target: 5'- gGCGgCC--CGCGuCGCCGGuGCGGGCc -3' miRNA: 3'- gUGCaGGuaGCGC-GCGGCC-CGCUCGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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