miRNA display CGI


Results 1 - 20 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17092 3' -67 NC_004333.2 + 30660 0.65 0.219372
Target:  5'- cUGCUCGagcaccuucaugaaGCCGUUCGCGccGCCGccGGCGgCg -3'
miRNA:   3'- -ACGGGC--------------UGGCGAGCGC--CGGC--CCGCgG- -5'
17092 3' -67 NC_004333.2 + 21185 0.66 0.217762
Target:  5'- aGgCCGGCCuGCUCGgGGCaUuacgugcgcaucaauGGGCgGCCg -3'
miRNA:   3'- aCgGGCUGG-CGAGCgCCG-G---------------CCCG-CGG- -5'
17092 3' -67 NC_004333.2 + 16600 0.66 0.217762
Target:  5'- uUGCgCC-ACCGCUCGCGGCCcgagaaagagaguguGGaauguucgacGaCGCCg -3'
miRNA:   3'- -ACG-GGcUGGCGAGCGCCGG---------------CC----------C-GCGG- -5'
17092 3' -67 NC_004333.2 + 21676 0.66 0.215633
Target:  5'- cGgCgGGuuGCUCuuugucaaauGCGGgCGGGCGUCg -3'
miRNA:   3'- aCgGgCUggCGAG----------CGCCgGCCCGCGG- -5'
17092 3' -67 NC_004333.2 + 48084 0.66 0.215633
Target:  5'- gGUgCCGACgaggCGCagGCGGCaacCGGGCGCg -3'
miRNA:   3'- aCG-GGCUG----GCGagCGCCG---GCCCGCGg -5'
17092 3' -67 NC_004333.2 + 6726 0.66 0.215633
Target:  5'- cUGCUCGAgCGCgccgagCGCGcuGCCGaGCGCg -3'
miRNA:   3'- -ACGGGCUgGCGa-----GCGC--CGGCcCGCGg -5'
17092 3' -67 NC_004333.2 + 38021 0.66 0.215633
Target:  5'- gUGCgCCGAcCCGUUCGauaCCuGGCGCCc -3'
miRNA:   3'- -ACG-GGCU-GGCGAGCgccGGcCCGCGG- -5'
17092 3' -67 NC_004333.2 + 9682 0.66 0.215633
Target:  5'- aGCCgGugCGCaacCGGCCGaugccGCGCCg -3'
miRNA:   3'- aCGGgCugGCGagcGCCGGCc----CGCGG- -5'
17092 3' -67 NC_004333.2 + 38968 0.66 0.210386
Target:  5'- cGUgCCGAUcagCGCgaaGCGGCgCGGGUGCg -3'
miRNA:   3'- aCG-GGCUG---GCGag-CGCCG-GCCCGCGg -5'
17092 3' -67 NC_004333.2 + 6950 0.66 0.210386
Target:  5'- cGCCgCGAuCCGCUCGaUGGCU--GCGCa -3'
miRNA:   3'- aCGG-GCU-GGCGAGC-GCCGGccCGCGg -5'
17092 3' -67 NC_004333.2 + 28208 0.66 0.210386
Target:  5'- -uCCUGGuuGuCUUGCGcGuCCGGGCGCg -3'
miRNA:   3'- acGGGCUggC-GAGCGC-C-GGCCCGCGg -5'
17092 3' -67 NC_004333.2 + 38880 0.66 0.20525
Target:  5'- cGCCCGuCCGCgcaccCGC-GCCGcuucGCGCUg -3'
miRNA:   3'- aCGGGCuGGCGa----GCGcCGGCc---CGCGG- -5'
17092 3' -67 NC_004333.2 + 15378 0.66 0.20373
Target:  5'- cUGCUCGACgGCaaGCGcCCGGugcugaugcugaccGCGCCg -3'
miRNA:   3'- -ACGGGCUGgCGagCGCcGGCC--------------CGCGG- -5'
17092 3' -67 NC_004333.2 + 47471 0.66 0.200222
Target:  5'- aGCUgCGAUUGCUUGCGcGUCGgucGGCGCUu -3'
miRNA:   3'- aCGG-GCUGGCGAGCGC-CGGC---CCGCGG- -5'
17092 3' -67 NC_004333.2 + 36306 0.66 0.200222
Target:  5'- cGCgCCGcCCGaguaGUcGCCGGGCGUCg -3'
miRNA:   3'- aCG-GGCuGGCgag-CGcCGGCCCGCGG- -5'
17092 3' -67 NC_004333.2 + 19505 0.66 0.200222
Target:  5'- cGCgCUGGCggCGCUCGUGGCCguauGGGCa-- -3'
miRNA:   3'- aCG-GGCUG--GCGAGCGCCGG----CCCGcgg -5'
17092 3' -67 NC_004333.2 + 19624 0.66 0.200222
Target:  5'- cGCgCCGACCGU--GCGaCCG-GCGCCc -3'
miRNA:   3'- aCG-GGCUGGCGagCGCcGGCcCGCGG- -5'
17092 3' -67 NC_004333.2 + 33300 0.66 0.200222
Target:  5'- uUGCgUCGGCCGCaUCGagccaaCCGGcGCGCCa -3'
miRNA:   3'- -ACG-GGCUGGCG-AGCgcc---GGCC-CGCGG- -5'
17092 3' -67 NC_004333.2 + 45485 0.66 0.198242
Target:  5'- cGCCCGAgcaggucagcgagaUCGUcuacaacUgGCgGGCgGGGCGCCc -3'
miRNA:   3'- aCGGGCU--------------GGCG-------AgCG-CCGgCCCGCGG- -5'
17092 3' -67 NC_004333.2 + 29118 0.66 0.195303
Target:  5'- gGCgCGAUCGUggGCGGCgCGGugcucGCGCUg -3'
miRNA:   3'- aCGgGCUGGCGagCGCCG-GCC-----CGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.