miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17092 5' -55.7 NC_004333.2 + 23471 0.66 0.678272
Target:  5'- cCGGGCuaccaguacGGCgUGACCGcccugucCGGACUGa -3'
miRNA:   3'- -GCCCG---------UCGaACUGGCcuuu---GCCUGAC- -5'
17092 5' -55.7 NC_004333.2 + 2676 0.66 0.678272
Target:  5'- -cGGCAGCUUGcagcgucgcGCCGGcgGCGGcCg- -3'
miRNA:   3'- gcCCGUCGAAC---------UGGCCuuUGCCuGac -5'
17092 5' -55.7 NC_004333.2 + 41634 0.66 0.678272
Target:  5'- -uGGCGGCagaUUG-UCGGgcGCGGGCUGc -3'
miRNA:   3'- gcCCGUCG---AACuGGCCuuUGCCUGAC- -5'
17092 5' -55.7 NC_004333.2 + 1995 0.66 0.678272
Target:  5'- gCGGGcCAGCUgGugCaGAcGCGuGGCUGg -3'
miRNA:   3'- -GCCC-GUCGAaCugGcCUuUGC-CUGAC- -5'
17092 5' -55.7 NC_004333.2 + 9878 0.66 0.667269
Target:  5'- aCGGGCAgGCauacgacGGCCGGAuGACGG-CUa -3'
miRNA:   3'- -GCCCGU-CGaa-----CUGGCCU-UUGCCuGAc -5'
17092 5' -55.7 NC_004333.2 + 26791 0.66 0.645173
Target:  5'- uGGGUcaAGUUccUGGCCGGcgcGGCGGGCa- -3'
miRNA:   3'- gCCCG--UCGA--ACUGGCCu--UUGCCUGac -5'
17092 5' -55.7 NC_004333.2 + 20580 0.66 0.634102
Target:  5'- gCGGcGCGGCggcGGCCGGcAGCGG-UUGc -3'
miRNA:   3'- -GCC-CGUCGaa-CUGGCCuUUGCCuGAC- -5'
17092 5' -55.7 NC_004333.2 + 42710 0.66 0.623028
Target:  5'- gCGGGCGGCguucgaucUGACCGac-AUGGAgUGg -3'
miRNA:   3'- -GCCCGUCGa-------ACUGGCcuuUGCCUgAC- -5'
17092 5' -55.7 NC_004333.2 + 26078 0.67 0.611963
Target:  5'- aGcGGCGGCgcuuCCGGAuuCGGGCa- -3'
miRNA:   3'- gC-CCGUCGaacuGGCCUuuGCCUGac -5'
17092 5' -55.7 NC_004333.2 + 42723 0.67 0.578911
Target:  5'- gCGGGCuGCUcGACgGGAGAC--GCUGc -3'
miRNA:   3'- -GCCCGuCGAaCUGgCCUUUGccUGAC- -5'
17092 5' -55.7 NC_004333.2 + 3217 0.67 0.578911
Target:  5'- cCGGuCAGC-UGGCCgacuucuuccaGGAAACGGACg- -3'
miRNA:   3'- -GCCcGUCGaACUGG-----------CCUUUGCCUGac -5'
17092 5' -55.7 NC_004333.2 + 21434 0.69 0.45266
Target:  5'- uGGGCGGCgcagGACgCGGA--CGGAaCUGu -3'
miRNA:   3'- gCCCGUCGaa--CUG-GCCUuuGCCU-GAC- -5'
17092 5' -55.7 NC_004333.2 + 6663 0.7 0.433042
Target:  5'- uGGGCGGCgcgccgUGGCgGcGAuGCGGGCUu -3'
miRNA:   3'- gCCCGUCGa-----ACUGgC-CUuUGCCUGAc -5'
17092 5' -55.7 NC_004333.2 + 3154 0.7 0.404569
Target:  5'- uCGGcCAGC-UGACCGGGuugcACGGACg- -3'
miRNA:   3'- -GCCcGUCGaACUGGCCUu---UGCCUGac -5'
17092 5' -55.7 NC_004333.2 + 41931 0.71 0.35983
Target:  5'- uCGGGCGaaUUGAUCgGGAAACGGAUg- -3'
miRNA:   3'- -GCCCGUcgAACUGG-CCUUUGCCUGac -5'
17092 5' -55.7 NC_004333.2 + 5208 0.71 0.342927
Target:  5'- aCGGGCGGCUcGcCCGu-GACGGACg- -3'
miRNA:   3'- -GCCCGUCGAaCuGGCcuUUGCCUGac -5'
17092 5' -55.7 NC_004333.2 + 46433 0.75 0.211037
Target:  5'- aGGGCGGCgagUGuCCGGuaccAGCGGACa- -3'
miRNA:   3'- gCCCGUCGa--ACuGGCCu---UUGCCUGac -5'
17092 5' -55.7 NC_004333.2 + 41871 1.07 0.001019
Target:  5'- uCGGGCAGCUUGACCGGAAACGGACUGc -3'
miRNA:   3'- -GCCCGUCGAACUGGCCUUUGCCUGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.