Results 1 - 12 of 12 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17095 | 5' | -48.9 | NC_004333.2 | + | 33339 | 0.66 | 0.958043 |
Target: 5'- gCUCGgcuGAACUUGacaaucaucCGA-CGAACGCAUa -3' miRNA: 3'- -GAGCau-CUUGAAU---------GCUcGCUUGCGUA- -5' |
|||||||
17095 | 5' | -48.9 | NC_004333.2 | + | 19620 | 0.66 | 0.958043 |
Target: 5'- -aCGgcGAGC--GCG-GCGAGCGCGg -3' miRNA: 3'- gaGCauCUUGaaUGCuCGCUUGCGUa -5' |
|||||||
17095 | 5' | -48.9 | NC_004333.2 | + | 22540 | 0.66 | 0.953669 |
Target: 5'- -aCGU-GAugUUGcCGAGCGAcgaGCGCGc -3' miRNA: 3'- gaGCAuCUugAAU-GCUCGCU---UGCGUa -5' |
|||||||
17095 | 5' | -48.9 | NC_004333.2 | + | 7945 | 0.67 | 0.921038 |
Target: 5'- -aCGUGGAcGCgaugGGGCGAGCGCGa -3' miRNA: 3'- gaGCAUCU-UGaaugCUCGCUUGCGUa -5' |
|||||||
17095 | 5' | -48.9 | NC_004333.2 | + | 27124 | 0.67 | 0.919113 |
Target: 5'- cCUCGUGGAAC-UGCGcuucgaacGGCGAguuguauggugucgGCGCGc -3' miRNA: 3'- -GAGCAUCUUGaAUGC--------UCGCU--------------UGCGUa -5' |
|||||||
17095 | 5' | -48.9 | NC_004333.2 | + | 36169 | 0.68 | 0.900539 |
Target: 5'- -aCGUAGAGCgccugcACGAGCacgagauuGGGCGCAa -3' miRNA: 3'- gaGCAUCUUGaa----UGCUCG--------CUUGCGUa -5' |
|||||||
17095 | 5' | -48.9 | NC_004333.2 | + | 30843 | 0.68 | 0.893095 |
Target: 5'- gUCGUAGAACgcguCGAGCGccuGGCGguUc -3' miRNA: 3'- gAGCAUCUUGaau-GCUCGC---UUGCguA- -5' |
|||||||
17095 | 5' | -48.9 | NC_004333.2 | + | 15866 | 0.69 | 0.860403 |
Target: 5'- cCUUGUGcGAGCccGCGAGCGAGcCGCc- -3' miRNA: 3'- -GAGCAU-CUUGaaUGCUCGCUU-GCGua -5' |
|||||||
17095 | 5' | -48.9 | NC_004333.2 | + | 37619 | 0.69 | 0.83304 |
Target: 5'- gUCGgcGAGCUgacgcACGAGC-AGCGCAc -3' miRNA: 3'- gAGCauCUUGAa----UGCUCGcUUGCGUa -5' |
|||||||
17095 | 5' | -48.9 | NC_004333.2 | + | 46320 | 0.71 | 0.750492 |
Target: 5'- aCUCGUcgaAGAucgACUgaACGAGCGGGCGCc- -3' miRNA: 3'- -GAGCA---UCU---UGAa-UGCUCGCUUGCGua -5' |
|||||||
17095 | 5' | -48.9 | NC_004333.2 | + | 41686 | 0.73 | 0.647612 |
Target: 5'- -cCGccAGAGC--ACGAGCGAGCGCGUg -3' miRNA: 3'- gaGCa-UCUUGaaUGCUCGCUUGCGUA- -5' |
|||||||
17095 | 5' | -48.9 | NC_004333.2 | + | 42331 | 1.07 | 0.005164 |
Target: 5'- uCUCGUAGAACUUACGAGCGAACGCAUa -3' miRNA: 3'- -GAGCAUCUUGAAUGCUCGCUUGCGUA- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home