miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17097 3' -58.6 NC_004333.2 + 25535 0.66 0.540505
Target:  5'- gUCGCCGCgaCGAucCCGGGUGUC--GUCg -3'
miRNA:   3'- -GGCGGCG--GCUuuGGCUCACGGucCAG- -5'
17097 3' -58.6 NC_004333.2 + 46831 0.66 0.540505
Target:  5'- gCGCgGCggacacuuCGAcGCCGAGUGCgucGGUCa -3'
miRNA:   3'- gGCGgCG--------GCUuUGGCUCACGgu-CCAG- -5'
17097 3' -58.6 NC_004333.2 + 38352 0.66 0.530052
Target:  5'- aCCGaaGCCGAacuGAUCGAcgcgcugucgcGUGUCGGGUg -3'
miRNA:   3'- -GGCggCGGCU---UUGGCU-----------CACGGUCCAg -5'
17097 3' -58.6 NC_004333.2 + 24386 0.66 0.530052
Target:  5'- aCGuUCGCgaGGAagucuGCCGAGaacuuUGCCGGGUCg -3'
miRNA:   3'- gGC-GGCGg-CUU-----UGGCUC-----ACGGUCCAG- -5'
17097 3' -58.6 NC_004333.2 + 37198 0.66 0.519674
Target:  5'- aCGCgCGCCGguGCCGAGUuccGCCGc--- -3'
miRNA:   3'- gGCG-GCGGCuuUGGCUCA---CGGUccag -5'
17097 3' -58.6 NC_004333.2 + 26297 0.66 0.519674
Target:  5'- gCGCCGUCG-AugCGAaaGCC-GGUCg -3'
miRNA:   3'- gGCGGCGGCuUugGCUcaCGGuCCAG- -5'
17097 3' -58.6 NC_004333.2 + 21175 0.66 0.519674
Target:  5'- gCGCUGCCGcAGGCCGGccUGCuCGGGg- -3'
miRNA:   3'- gGCGGCGGC-UUUGGCUc-ACG-GUCCag -5'
17097 3' -58.6 NC_004333.2 + 37759 0.66 0.518641
Target:  5'- -aGCCGCCacgcGCCGGGccgGCCgacgagcGGGUCg -3'
miRNA:   3'- ggCGGCGGcuu-UGGCUCa--CGG-------UCCAG- -5'
17097 3' -58.6 NC_004333.2 + 22246 0.66 0.509377
Target:  5'- aCCGCCGCCG--GCCGcc-GCCGGcGa- -3'
miRNA:   3'- -GGCGGCGGCuuUGGCucaCGGUC-Cag -5'
17097 3' -58.6 NC_004333.2 + 23504 0.66 0.499166
Target:  5'- aCGUCGaCCGAuccGGCCGGcggcggguacGUGCCGGGc- -3'
miRNA:   3'- gGCGGC-GGCU---UUGGCU----------CACGGUCCag -5'
17097 3' -58.6 NC_004333.2 + 40784 0.66 0.489048
Target:  5'- gCCGCCGCCGGugacGAUCGcGGcGaUCGGGUUg -3'
miRNA:   3'- -GGCGGCGGCU----UUGGC-UCaC-GGUCCAG- -5'
17097 3' -58.6 NC_004333.2 + 31954 0.67 0.47803
Target:  5'- aCGCaccuuguugaacaCGCCGAAGCCGcccUGCUcGGUCg -3'
miRNA:   3'- gGCG-------------GCGGCUUUGGCuc-ACGGuCCAG- -5'
17097 3' -58.6 NC_004333.2 + 26670 0.67 0.449589
Target:  5'- gCCgGCUGCCGAuAgCGucaGGUcGCCAGGUg -3'
miRNA:   3'- -GG-CGGCGGCUuUgGC---UCA-CGGUCCAg -5'
17097 3' -58.6 NC_004333.2 + 46065 0.67 0.430529
Target:  5'- gCCaGCCcUCGgcGCCGAGUGgCAGGcCg -3'
miRNA:   3'- -GG-CGGcGGCuuUGGCUCACgGUCCaG- -5'
17097 3' -58.6 NC_004333.2 + 6912 0.68 0.421178
Target:  5'- -aGCCGCCGGuAGCCGAcgaGUGCCccGcCg -3'
miRNA:   3'- ggCGGCGGCU-UUGGCU---CACGGucCaG- -5'
17097 3' -58.6 NC_004333.2 + 20558 0.68 0.421178
Target:  5'- gCGCCGCUGAucgUCGGcGcGUCGGGUCg -3'
miRNA:   3'- gGCGGCGGCUuu-GGCU-CaCGGUCCAG- -5'
17097 3' -58.6 NC_004333.2 + 2741 0.68 0.393877
Target:  5'- cCCGUCacaGCCGAGAUCGcggccgccGUGCC-GGUCg -3'
miRNA:   3'- -GGCGG---CGGCUUUGGCu-------CACGGuCCAG- -5'
17097 3' -58.6 NC_004333.2 + 2753 0.68 0.393877
Target:  5'- gCCGCCGCCGGcgcgacGCUGcaAGcUGCCGGcGUUg -3'
miRNA:   3'- -GGCGGCGGCUu-----UGGC--UC-ACGGUC-CAG- -5'
17097 3' -58.6 NC_004333.2 + 43470 0.68 0.376324
Target:  5'- gCGCCGCaauCGAAGgUGAGUGUgAcGGUCu -3'
miRNA:   3'- gGCGGCG---GCUUUgGCUCACGgU-CCAG- -5'
17097 3' -58.6 NC_004333.2 + 46866 0.69 0.367749
Target:  5'- aCGCCGUgcgcucgaaaGAAACCGAGUGCCGc--- -3'
miRNA:   3'- gGCGGCGg---------CUUUGGCUCACGGUccag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.